Variant report

Variant	rs192724041
Chromosome Location	chr4:148896523-148896524
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:148881694..148883564-chr4:148895633..148897317,2	MCF-7	breast:

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv498083	chr4:148519825-148917583	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Genic enhancers Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
2	nsv880244	chr4:148764252-148920089	Strong transcription Enhancers Genic enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
3	nsv1029845	chr4:148766290-148916437	Weak transcription Flanking Active TSS Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1030001	chr4:148773479-148916437	Genic enhancers Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv1017904	chr4:148814133-148975348	Weak transcription Enhancers ZNF genes & repeats Strong transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv3398182	chr4:148895102-148898800	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:68 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:148859400-148898000	Weak transcription	Duodenum Mucosa	Duodenum
2	chr4:148864400-148896800	Weak transcription	Osteobl	bone
3	chr4:148866400-148927400	Weak transcription	Thymus	Thymus
4	chr4:148868200-148902600	Weak transcription	NH-A	brain
5	chr4:148880200-148896600	Weak transcription	Fetal Heart	heart
6	chr4:148885600-148905200	Weak transcription	Fetal Intestine Small	intestine
7	chr4:148885600-148905400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr4:148885600-148939000	Weak transcription	Pancreas	Pancrea
9	chr4:148885800-148907000	Weak transcription	Placenta Amnion	Placenta Amnion
10	chr4:148885800-148912800	Weak transcription	Fetal Lung	lung
11	chr4:148886000-148917600	Weak transcription	Esophagus	oesophagus
12	chr4:148886800-148901800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
13	chr4:148888200-148896600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
14	chr4:148889000-148896600	Weak transcription	Aorta	Aorta
15	chr4:148889000-148905400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
16	chr4:148889200-148899400	Weak transcription	Fetal Muscle Trunk	muscle
17	chr4:148889200-148936200	Weak transcription	Fetal Intestine Large	intestine
18	chr4:148889400-148905400	Weak transcription	NHLF	lung
19	chr4:148889600-148897000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
20	chr4:148890400-148897800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
21	chr4:148891400-148905000	Weak transcription	Stomach Mucosa	stomach
22	chr4:148891400-148905400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
23	chr4:148891600-148896800	Weak transcription	Cortex derived primary cultured neurospheres	brain
24	chr4:148891600-148896800	Weak transcription	Stomach Smooth Muscle	stomach
25	chr4:148891600-148905400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
26	chr4:148891600-148912800	Weak transcription	Fetal Kidney	kidney
27	chr4:148891600-148920600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
28	chr4:148891600-148928000	Weak transcription	A549	lung
29	chr4:148891800-148901600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr4:148892000-148898200	Weak transcription	Primary hematopoietic stem cells	blood
31	chr4:148892600-148897000	Weak transcription	HUVEC	blood vessel
32	chr4:148892800-148897200	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr4:148893000-148897000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
34	chr4:148893800-148901800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr4:148893800-148901800	Weak transcription	Monocytes-CD14+_RO01746	blood
36	chr4:148894600-148896600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
37	chr4:148896000-148897200	Genic enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
38	chr4:148896000-148898000	Enhancers	NHDF-Ad	bronchial
39	chr4:148896200-148897200	Genic enhancers	HSMM	muscle
40	chr4:148896200-148897400	Enhancers	Psoas Muscle	Psoas
41	chr4:148896200-148897600	Enhancers	Skeletal Muscle Female	skeletal muscle
42	chr4:148896200-148898000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
43	chr4:148896200-148898200	Enhancers	Colon Smooth Muscle	Colon
44	chr4:148896200-148898200	Enhancers	HSMMtube	muscle
45	chr4:148896200-148898800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr4:148896400-148896600	Enhancers	Spleen	Spleen
47	chr4:148896400-148896800	ZNF genes & repeats	GM12878-XiMat	blood
48	chr4:148896400-148897000	Genic enhancers	Rectal Smooth Muscle	rectum
49	chr4:148896400-148897200	Genic enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
50	chr4:148896400-148897200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links