Variant report

Variant	rs1927720
Chromosome Location	chr13:85815100-85815101
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 68 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs1038734	0.82[ASN][1000 genomes]
rs1038735	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1038736	0.82[ASN][1000 genomes]
rs1038737	0.82[ASN][1000 genomes]
rs12429689	0.87[ASN][1000 genomes]
rs12865536	0.87[ASN][1000 genomes]
rs12865565	0.87[ASN][1000 genomes]
rs1490090	0.86[ASN][1000 genomes]
rs1490091	0.87[ASN][1000 genomes]
rs1907006	0.82[ASN][1000 genomes]
rs1907007	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs1907008	0.82[ASN][1000 genomes]
rs1927721	0.82[ASN][1000 genomes]
rs1927722	0.82[ASN][1000 genomes]
rs1927723	0.82[ASN][1000 genomes]
rs2451411	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2479704	0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7489848	0.82[ASN][1000 genomes]
rs8000153	0.87[ASN][1000 genomes]
rs8000675	0.87[ASN][1000 genomes]
rs8000940	0.87[ASN][1000 genomes]
rs8002234	0.87[ASN][1000 genomes]
rs9319123	0.86[ASN][1000 genomes]
rs9566051	0.82[ASN][1000 genomes]
rs9566052	0.82[ASN][1000 genomes]
rs9566053	0.82[ASN][1000 genomes]
rs9566054	0.82[ASN][1000 genomes]
rs9566056	0.85[ASN][1000 genomes]
rs9575841	0.81[ASN][1000 genomes]
rs9575843	0.82[ASN][1000 genomes]
rs9575844	0.82[ASN][1000 genomes]
rs9575845	0.82[ASN][1000 genomes]
rs9575846	0.82[ASN][1000 genomes]
rs9575847	0.82[ASN][1000 genomes]
rs9575848	0.82[ASN][1000 genomes]
rs9575850	0.82[ASN][1000 genomes]
rs9575851	0.87[ASN][1000 genomes]
rs9594004	0.81[ASN][1000 genomes]
rs9594005	0.81[ASN][1000 genomes]
rs9594006	0.81[ASN][1000 genomes]
rs9594007	0.82[ASN][1000 genomes]
rs9602692	0.82[ASN][1000 genomes]
rs9602694	0.81[ASN][1000 genomes]
rs9602695	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs9602697	0.82[ASN][1000 genomes]
rs9602698	0.82[ASN][1000 genomes]
rs9602699	0.86[AFR][1000 genomes];0.83[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs9602702	0.82[ASN][1000 genomes]
rs9602703	0.82[ASN][1000 genomes]
rs9634742	0.87[ASN][1000 genomes]
rs9635066	0.82[ASN][1000 genomes]
rs9635067	0.87[ASN][1000 genomes]
rs9635068	0.94[AFR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:15 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916866	chr13:85505771-86241562	Active TSS Enhancers Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
2	nsv1050105	chr13:85524968-86218429	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
3	nsv541857	chr13:85524968-86218429	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
4	nsv821673	chr13:85548446-85969019	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	nsv900726	chr13:85623683-85828645	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv900729	chr13:85652995-85969076	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
7	esv2422250	chr13:85718435-85971539	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	nsv562570	chr13:85743199-85824831	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
9	nsv1050937	chr13:85771174-86093359	Weak transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv541858	chr13:85771174-86093359	Weak transcription Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
11	esv1799098	chr13:85774160-85816274	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
12	nsv1037401	chr13:85801684-86126708	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
13	esv2756565	chr13:85802399-85867199	Enhancers Weak transcription Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
14	nsv977396	chr13:85803364-85833396	Enhancers Active TSS Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
15	esv2752724	chr13:85810499-86320999	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:85814000-85815600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr13:85814000-85815800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr13:85814000-85816000	Enhancers	NHEK	skin
4	chr13:85814000-85816200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr13:85814200-85815600	Enhancers	HMEC	breast
6	chr13:85814800-85815600	Enhancers	A549	lung
7	chr13:85814800-85815800	Enhancers	HUVEC	blood vessel
8	chr13:85815000-85815600	Enhancers	Hela-S3	cervix

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