Variant report

Variant	rs192778164
Chromosome Location	chr1:211378022-211378023
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:61)
Chromatin interactive
region (count:2)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:61 , 50 per page) page: 1 2

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr1:211377990-211378040	NT2-D1	testis:	n/a
2	chr1:211377990-211378040	HEK293	kidney:	embryo
3	chr1:211377990-211378040	PFSK-1	brain:	n/a
4	chr1:211377990-211378040	GM12878	blood:	n/a
5	chr1:211377990-211378040	PrEC	prostate:	n/a
6	chr1:211377990-211378040	Hepatocyte	liver:	n/a
7	chr1:211377990-211378040	Hela-S3	cervix:	n/a
8	chr1:211377990-211378040	ovcar-3	ovarian:	n/a
9	chr1:211377990-211378040	NHBE	bronchial:	n/a
10	chr1:211377990-211378040	HRCEpiC	kidney:	n/a
11	chr1:211377990-211378040	GM12891	blood:	n/a
12	chr1:211377990-211378040	SAEC	small airway:	n/a
13	chr1:211377990-211378040	Caco-2	colon:	n/a
14	chr1:211377990-211378040	SK-N-SH_RA	brain:	n/a
15	chr1:211377990-211378040	MCF-7	breast:	n/a
16	chr1:211377990-211378040	K562	blood:	n/a
17	chr1:211377990-211378040	CMK	blood:	n/a
18	chr1:211377990-211378040	Jurkat	blood:	n/a
19	chr1:211377990-211378040	HPAEpiC	pulmonary alveolar:	n/a
20	chr1:211377990-211378040	HUVEC	blood vessel:	n/a
21	chr1:211377990-211378040	SK-N-SH	brain:	n/a
22	chr1:211377990-211378040	AG10803	skin:	n/a
23	chr1:211377990-211378040	RPTEC	kidney:	n/a
24	chr1:211377990-211378040	NH-A	brain:	n/a
25	chr1:211377990-211378040	SK-N-MC	brain:	n/a
26	chr1:211377990-211378040	PANC-1	pancreas:	n/a
27	chr1:211377990-211378040	T-47D	breast:	n/a
28	chr1:211377990-211378040	HNPCEpiC	eye:	n/a
29	chr1:211377990-211378040	HIPEpiC	eye:	n/a
30	chr1:211377990-211378040	HMEC	breast:	n/a
31	chr1:211377990-211378040	HCM	heart:	n/a
32	chr1:211377990-211378040	GM06990	blood:	n/a
33	chr1:211377990-211378040	NB4	blood:	n/a
34	chr1:211377990-211378040	AG04449	skin:	fetal
35	chr1:211377990-211378040	HCF	heart:	n/a
36	chr1:211377990-211378040	AG09319	gingival:	n/a
37	chr1:211377990-211378040	BE2_C	brain:	n/a
38	chr1:211377990-211378040	BJ	skin:	n/a
39	chr1:211377990-211378040	A549	lung:	n/a
40	chr1:211377990-211378040	SKMC	muscle:	n/a
41	chr1:211377990-211378040	ECC-1	luminal epithelium:	n/a
42	chr1:211377990-211378040	LNCaP	prostate:	n/a
43	chr1:211377990-211378040	HAEpiC	amniotic membrane:	n/a
44	chr1:211377990-211378040	HepG2	liver:	n/a
45	chr1:211377990-211378040	U87	brain:	n/a
46	chr1:211377990-211378040	HEEpiC	esophagus:	n/a
47	chr1:211377990-211378040	HCT-116	colon:	n/a
48	chr1:211377990-211378040	HRE	kidney:	n/a
49	chr1:211377990-211378040	GM12892	blood:	n/a
50	chr1:211377990-211378040	NHDF-neo	bronchial:	n/a

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:211376596..211378898-chr1:211381344..211382973,2	K562	blood:
2	chr1:211377631..211380147-chr1:211432111..211434053,2	K562	blood:

No data

Variant related genes	Relation type
ENSG00000226986	CpG island
ENSG00000117625	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1806574	chr1:211369721-211383129	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv1808906	chr1:211369721-211383129	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
3	nsv945277	chr1:211377389-211382878	Enhancers	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
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