Variant report

Variant	rs1927837
Chromosome Location	chr13:29712753-29712754
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs1109007	0.84[CEU][hapmap]
rs11147364	0.90[JPT][hapmap];0.84[TSI][hapmap]
rs11618923	0.90[JPT][hapmap];0.80[MEX][hapmap]
rs1927838	0.84[CEU][hapmap]
rs4365146	0.84[CEU][hapmap]
rs4432107	0.84[CEU][hapmap]
rs4495979	0.90[JPT][hapmap]
rs6490360	0.90[JPT][hapmap];0.82[TSI][hapmap]
rs7330035	0.90[JPT][hapmap];0.84[TSI][hapmap]
rs7331934	0.84[CEU][hapmap]
rs7332351	0.84[CEU][hapmap]
rs9506114	0.90[JPT][hapmap]
rs9508284	0.84[CEU][hapmap]
rs9508299	0.90[JPT][hapmap];0.82[TSI][hapmap]
rs9508300	0.90[JPT][hapmap];0.82[TSI][hapmap]
rs9508302	0.90[JPT][hapmap];0.84[TSI][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3406145	chr13:29616606-29917459	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1927837	PDX1	cis	cerebellum	SCAN
rs1927837	FRY	cis	parietal	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29711800-29714800	Active TSS	Right Ventricle	heart
2	chr13:29712400-29713000	Weak transcription	Aorta	Aorta
3	chr13:29712400-29713200	Weak transcription	Left Ventricle	heart
4	chr13:29712400-29714400	Active TSS	Right Atrium	heart
5	chr13:29712600-29712800	Weak transcription	Muscle Satellite Cultured Cells	--
6	chr13:29712600-29713000	Weak transcription	Fetal Heart	heart
7	chr13:29712600-29713800	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr13:29712600-29714600	Weak transcription	Liver	Liver
9	chr13:29712600-29715400	Weak transcription	Dnd41	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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