Variant report

Variant	rs1927845
Chromosome Location	chr13:29720732-29720733
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs1887748	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs34379728	0.96[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs35231942	0.89[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4272875	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.96[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7317027	0.82[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs7993175	1.00[CEU][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs7997007	0.82[CEU][hapmap];1.00[CHB][hapmap];0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9314936	1.00[JPT][hapmap]
rs9506111	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.85[GIH][hapmap];1.00[MEX][hapmap];0.97[MKK][hapmap];0.90[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9506112	0.84[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9508291	0.87[AMR][1000 genomes];0.81[ASN][1000 genomes]
rs9551605	0.93[AMR][1000 genomes]
rs9551607	1.00[CEU][hapmap];1.00[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9579263	1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533835	chr13:29141132-29962069	Weak transcription Strong transcription Flanking Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
2	esv3406145	chr13:29616606-29917459	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv899957	chr13:29720732-29820422	Weak transcription Genic enhancers ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:29715000-29723800	Weak transcription	Aorta	Aorta
2	chr13:29716000-29727800	Weak transcription	Fetal Heart	heart

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links