Variant report

Variant	rs192879401
Chromosome Location	chr1:165885317-165885318
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr1:165737165..165740400-chr1:165883348..165886412,3	MCF-7	breast:
2	chr1:165570598..165571161-chr1:165885123..165885647,2	K562	blood:

Variant related genes	Relation type
ENSG00000224358	Chromatin interaction
ENSG00000143183	Chromatin interaction

Extended variants
information (count: 1 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv872509	chr1:165885147-165917109	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:165858600-165902400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
2	chr1:165879200-165886200	Enhancers	Stomach Mucosa	stomach
3	chr1:165879400-165894600	Weak transcription	Aorta	Aorta
4	chr1:165880000-165888400	Weak transcription	Spleen	Spleen
5	chr1:165880600-165889000	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr1:165880600-165894200	Weak transcription	Right Atrium	heart
7	chr1:165880800-165902600	Weak transcription	H9 Cell Line	embryonic stem cell
8	chr1:165881000-165886800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr1:165881000-165887200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr1:165881800-165888400	Weak transcription	Fetal Intestine Small	intestine
11	chr1:165882200-165889200	Weak transcription	Fetal Brain Female	brain
12	chr1:165882200-165889400	Weak transcription	Rectal Mucosa Donor 29	rectum
13	chr1:165882200-165894200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
14	chr1:165883600-165888400	Weak transcription	Muscle Satellite Cultured Cells	--
15	chr1:165883600-165896400	Weak transcription	Dnd41	blood
16	chr1:165884200-165885400	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr1:165884200-165885800	Enhancers	HSMMtube	muscle
18	chr1:165884400-165885400	Enhancers	Pancreas	Pancrea
19	chr1:165884600-165885400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
20	chr1:165884600-165885400	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
21	chr1:165884600-165885400	Enhancers	HMEC	breast
22	chr1:165884600-165885600	Enhancers	Duodenum Mucosa	Duodenum
23	chr1:165884800-165885400	Enhancers	Hela-S3	cervix
24	chr1:165885000-165885400	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
25	chr1:165885000-165885400	Enhancers	Gastric	stomach
26	chr1:165885000-165885400	Enhancers	Small Intestine	intestine
27	chr1:165885000-165885800	Enhancers	Fetal Heart	heart
28	chr1:165885200-165885400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
29	chr1:165885200-165885400	Enhancers	Esophagus	oesophagus
30	chr1:165885200-165885600	Enhancers	Sigmoid Colon	Sigmoid Colon

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