Variant report

Variant	rs192895255
Chromosome Location	chr3:69105793-69105794
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	IRF1	chr3:69105740-69105822	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:69105444..69107005-chr3:69126154..69128272,2	MCF-7	breast:
2	chr3:69101460..69104533-chr3:69105331..69108214,3	MCF-7	breast:
3	chr3:69105141..69107620-chr3:69110024..69112516,2	MCF-7	breast:

Variant related genes	Relation type
TMF1	TF binding region
ENSG00000144747	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv876933	chr3:69059023-69227379	Enhancers Strong transcription Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
2	nsv520488	chr3:69104752-69114005	Strong transcription Genic enhancers Weak transcription Enhancers Flanking Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:125 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69101400-69127000	Weak transcription	Small Intestine	intestine
2	chr3:69101600-69109800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:69101800-69107800	Weak transcription	Gastric	stomach
4	chr3:69101800-69107800	Weak transcription	Ovary	ovary
5	chr3:69101800-69109800	Weak transcription	Lung	lung
6	chr3:69101800-69110600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr3:69101800-69128400	Weak transcription	Aorta	Aorta
8	chr3:69102000-69106800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr3:69102000-69107200	Weak transcription	Left Ventricle	heart
10	chr3:69102000-69107400	Weak transcription	Fetal Brain Male	brain
11	chr3:69102000-69107600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
12	chr3:69102000-69107600	Weak transcription	Fetal Muscle Trunk	muscle
13	chr3:69102000-69107600	Weak transcription	Thymus	Thymus
14	chr3:69102000-69107800	Weak transcription	Brain Inferior Temporal Lobe	brain
15	chr3:69102000-69107800	Weak transcription	Esophagus	oesophagus
16	chr3:69102000-69108000	Weak transcription	NHLF	lung
17	chr3:69102000-69109800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
18	chr3:69102000-69109800	Weak transcription	Pancreatic Islets	Pancreatic Islet
19	chr3:69102000-69109800	Weak transcription	Spleen	Spleen
20	chr3:69102000-69110400	Weak transcription	Colonic Mucosa	Colon
21	chr3:69102000-69113200	Strong transcription	HSMM	muscle
22	chr3:69102000-69128200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
23	chr3:69102000-69128400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
24	chr3:69102200-69105800	Weak transcription	Brain Substantia Nigra	brain
25	chr3:69102200-69106600	Weak transcription	Primary T cells from cord blood	blood
26	chr3:69102200-69107200	Weak transcription	Primary hematopoietic stem cells	blood
27	chr3:69102200-69107600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
28	chr3:69102200-69107600	Weak transcription	H9 Cell Line	embryonic stem cell
29	chr3:69102200-69107600	Weak transcription	Cortex derived primary cultured neurospheres	brain
30	chr3:69102200-69107600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
31	chr3:69102200-69107600	Weak transcription	Brain Anterior Caudate	brain
32	chr3:69102200-69107600	Weak transcription	Brain Cingulate Gyrus	brain
33	chr3:69102200-69107600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
34	chr3:69102200-69107600	Weak transcription	Rectal Smooth Muscle	rectum
35	chr3:69102200-69107600	Weak transcription	Sigmoid Colon	Sigmoid Colon
36	chr3:69102200-69107800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
37	chr3:69102200-69107800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr3:69102200-69107800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
39	chr3:69102200-69107800	Weak transcription	Brain Angular Gyrus	brain
40	chr3:69102200-69107800	Weak transcription	Fetal Heart	heart
41	chr3:69102200-69107800	Weak transcription	Fetal Muscle Leg	muscle
42	chr3:69102200-69107800	Weak transcription	Fetal Stomach	stomach
43	chr3:69102200-69107800	Weak transcription	Placenta Amnion	Placenta Amnion
44	chr3:69102200-69107800	Weak transcription	Psoas Muscle	Psoas
45	chr3:69102200-69107800	Weak transcription	HSMMtube	muscle
46	chr3:69102200-69108000	Weak transcription	Colon Smooth Muscle	Colon
47	chr3:69102200-69109800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
48	chr3:69102200-69109800	Weak transcription	Pancreas	Pancrea
49	chr3:69102200-69109800	Weak transcription	Right Ventricle	heart
50	chr3:69102200-69110000	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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