Variant report

Variant	rs192937273
Chromosome Location	chr12:4727368-4727369
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv557123	chr12:4436632-4736569	Transcr. at gene 5' and 3' Weak transcription Strong transcription Enhancers Active TSS Flanking Active TSS Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
2	nsv832318	chr12:4655799-4875837	Enhancers Strong transcription Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	18 gene(s)	inside rSNPs	diseases
3	nsv898617	chr12:4715082-4768619	Enhancers Weak transcription Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv468986	chr12:4726068-4751798	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
5	nsv557124	chr12:4726068-4751798	Weak transcription Enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
6	nsv898618	chr12:4726068-4764137	Weak transcription Active TSS Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:4723600-4728200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
2	chr12:4723600-4735600	Weak transcription	HMEC	breast
3	chr12:4723800-4727400	Weak transcription	Cortex derived primary cultured neurospheres	brain
4	chr12:4723800-4728000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
5	chr12:4723800-4728600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr12:4723800-4732000	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
7	chr12:4724200-4727400	Weak transcription	Fetal Thymus	thymus
8	chr12:4724200-4735600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr12:4724200-4756800	Weak transcription	Skeletal Muscle Male	skeletal muscle
10	chr12:4724400-4727600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
11	chr12:4724800-4727400	Weak transcription	HSMMtube	muscle
12	chr12:4724800-4729000	Weak transcription	Primary hematopoietic stem cells	blood
13	chr12:4725000-4727600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
14	chr12:4725200-4727400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr12:4725200-4727600	Weak transcription	Primary monocytes fromperipheralblood	blood
16	chr12:4725200-4727600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr12:4725200-4727600	Weak transcription	Fetal Intestine Large	intestine
18	chr12:4725200-4727600	Weak transcription	Dnd41	blood
19	chr12:4725200-4728200	Weak transcription	Sigmoid Colon	Sigmoid Colon
20	chr12:4725200-4728400	Weak transcription	Esophagus	oesophagus
21	chr12:4725200-4728400	Weak transcription	A549	lung
22	chr12:4725200-4728800	Weak transcription	Gastric	stomach
23	chr12:4725400-4727400	Weak transcription	Primary T cells fromperipheralblood	blood
24	chr12:4725400-4727600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
25	chr12:4725400-4727800	Weak transcription	Primary neutrophils fromperipheralblood	blood
26	chr12:4725400-4728000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr12:4725400-4728200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
28	chr12:4725400-4728600	Weak transcription	Monocytes-CD14+_RO01746	blood
29	chr12:4725400-4728800	Weak transcription	Primary T cells from cord blood	blood
30	chr12:4725400-4736800	Weak transcription	Pancreas	Pancrea
31	chr12:4725400-4737000	Weak transcription	Brain Anterior Caudate	brain
32	chr12:4725400-4737000	Weak transcription	Left Ventricle	heart
33	chr12:4725400-4752200	Weak transcription	Brain Hippocampus Middle	brain
34	chr12:4725600-4727400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
35	chr12:4725600-4735800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr12:4725600-4738400	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr12:4725800-4729200	Weak transcription	Primary B cells from cord blood	blood
38	chr12:4726000-4727600	Weak transcription	Primary T helper cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links