Variant report

Variant	rs192961209
Chromosome Location	chr3:81599245-81599246
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 24 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv934018	chr3:81413060-81655338	Weak transcription Strong transcription Enhancers Active TSS ZNF genes & repeats Genic enhancers Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv933756	chr3:81413060-81754738	Weak transcription Strong transcription Enhancers Genic enhancers Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv1003217	chr3:81435044-81752521	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1012133	chr3:81499082-81817471	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers Flanking Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
5	nsv933259	chr3:81523854-81730617	Enhancers Weak transcription Strong transcription Genic enhancers ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
6	nsv949545	chr3:81523898-81893929	Strong transcription Weak transcription Active TSS Enhancers Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
7	nsv999587	chr3:81534364-81707800	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
8	nsv536603	chr3:81534364-81707800	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
9	esv1008470	chr3:81592059-81602167	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
10	esv3463408	chr3:81595466-81599755	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
11	esv3463410	chr3:81595466-81599755	Weak transcription Strong transcription Genic enhancers Enhancers ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
12	esv995823	chr3:81595571-81599666	Weak transcription Genic enhancers Active TSS ZNF genes & repeats Enhancers Strong transcription	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
13	esv1005110	chr3:81595776-81599520	ZNF genes & repeats Weak transcription Genic enhancers Enhancers Strong transcription Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
14	nsv590766	chr3:81596092-81599373	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
15	nsv590767	chr3:81596092-81599458	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
16	nsv590768	chr3:81596092-81599580	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
17	esv10285	chr3:81596296-81599606	Weak transcription Enhancers ZNF genes & repeats Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
18	nsv590769	chr3:81597257-81599458	ZNF genes & repeats Enhancers Weak transcription Strong transcription Active TSS Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
19	nsv590770	chr3:81597257-81599580	Weak transcription Strong transcription ZNF genes & repeats Genic enhancers Enhancers Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
20	nsv590771	chr3:81597562-81599580	Enhancers Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Active TSS	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
21	nsv590772	chr3:81597750-81599458	Weak transcription Active TSS Enhancers ZNF genes & repeats Strong transcription Genic enhancers	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a
22	nsv590773	chr3:81598274-81599458	Weak transcription Enhancers Genic enhancers ZNF genes & repeats Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
23	nsv590774	chr3:81598384-81599458	Enhancers Weak transcription ZNF genes & repeats Genic enhancers Strong transcription	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a
24	nsv590775	chr3:81598531-81599580	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:81581600-81628200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:81582800-81613200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr3:81583400-81603800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr3:81583400-81613200	Weak transcription	Lung	lung
5	chr3:81583600-81613200	Weak transcription	Primary T cells from cord blood	blood
6	chr3:81583600-81625600	Weak transcription	HUVEC	blood vessel
7	chr3:81583800-81599400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:81583800-81603400	Weak transcription	NHLF	lung
9	chr3:81583800-81608000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr3:81583800-81608000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
11	chr3:81584200-81604000	Weak transcription	Aorta	Aorta
12	chr3:81584200-81636600	Weak transcription	Placenta	Placenta
13	chr3:81584400-81603400	Weak transcription	HSMMtube	muscle
14	chr3:81584600-81612200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
15	chr3:81584600-81613000	Weak transcription	Ovary	ovary
16	chr3:81584800-81610400	Weak transcription	HSMM	muscle
17	chr3:81585400-81599800	Weak transcription	Psoas Muscle	Psoas
18	chr3:81586200-81599400	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr3:81586200-81610800	Weak transcription	Adipose Nuclei	Adipose
20	chr3:81588400-81612200	Weak transcription	Left Ventricle	heart
21	chr3:81588600-81603200	Weak transcription	Liver	Liver
22	chr3:81591000-81600600	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr3:81596200-81600000	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:81597200-81599600	Weak transcription	Right Ventricle	heart
25	chr3:81597400-81604000	Weak transcription	Primary hematopoietic stem cells	blood
26	chr3:81597600-81613200	Weak transcription	Primary B cells from cord blood	blood
27	chr3:81598000-81603800	Weak transcription	Fetal Heart	heart
28	chr3:81598200-81625600	Weak transcription	Duodenum Smooth Muscle	Duodenum
29	chr3:81598600-81599600	ZNF genes & repeats	Dnd41	blood
30	chr3:81598600-81599800	Genic enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
31	chr3:81598600-81600600	Enhancers	Muscle Satellite Cultured Cells	--
32	chr3:81598600-81600800	Enhancers	Osteobl	bone
33	chr3:81598600-81601400	Enhancers	NHDF-Ad	bronchial
34	chr3:81598800-81599800	Weak transcription	K562	blood
35	chr3:81598800-81600000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
36	chr3:81598800-81600400	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr3:81598800-81603600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
38	chr3:81598800-81613200	Weak transcription	Primary neutrophils fromperipheralblood	blood
39	chr3:81599000-81600200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow

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