Variant report

Variant	rs192967969
Chromosome Location	chr3:105076579-105076580
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:105072055..105074262-chr3:105075883..105078714,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv525071	chr3:105004853-105409321	Enhancers Strong transcription Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
2	nsv829650	chr3:105070893-105255036	Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	esv3464312	chr3:105075340-105078277	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv3464313	chr3:105075340-105078277	Enhancers Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:35 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:105071000-105078200	Weak transcription	A549	lung
2	chr3:105073000-105078600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr3:105073000-105081200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
4	chr3:105073400-105084400	Weak transcription	Aorta	Aorta
5	chr3:105073600-105077600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr3:105074400-105083600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
7	chr3:105074600-105077600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr3:105074600-105077800	Weak transcription	HSMM	muscle
9	chr3:105074600-105078200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr3:105074600-105078200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
11	chr3:105074600-105078200	Weak transcription	HMEC	breast
12	chr3:105074600-105078200	Weak transcription	HSMMtube	muscle
13	chr3:105074600-105078200	Weak transcription	NHDF-Ad	bronchial
14	chr3:105074800-105077800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:105074800-105078000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr3:105074800-105078000	Weak transcription	NHEK	skin
17	chr3:105074800-105079800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
18	chr3:105074800-105083000	Weak transcription	HUES6 Cell Line	embryonic stem cell
19	chr3:105075000-105077400	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr3:105075000-105077400	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
21	chr3:105075000-105077800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
22	chr3:105075000-105077800	Weak transcription	NH-A	brain
23	chr3:105075000-105077800	Weak transcription	Osteobl	bone
24	chr3:105075000-105078000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
25	chr3:105075000-105078200	Weak transcription	NHLF	lung
26	chr3:105075000-105078400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
27	chr3:105075200-105077000	Weak transcription	HUVEC	blood vessel
28	chr3:105075200-105078000	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
29	chr3:105076000-105077400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr3:105076000-105077800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
31	chr3:105076200-105077200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
32	chr3:105076200-105077600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr3:105076200-105077800	Weak transcription	Monocytes-CD14+_RO01746	blood
34	chr3:105076200-105078200	Weak transcription	Primary monocytes fromperipheralblood	blood
35	chr3:105076200-105083600	Weak transcription	Cortex derived primary cultured neurospheres	brain

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