Variant report

Variant	rs193019166
Chromosome Location	chr4:144286541-144286542
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr4:144284857..144287398-chr4:144288484..144291385,2	K562	blood:
2	chr4:144283863..144286903-chr4:144287176..144291126,4	K562	blood:
3	chr4:144280022..144283375-chr4:144285064..144288406,3	K562	blood:
4	chr4:144257678..144260213-chr4:144284163..144287062,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000109458	Chromatin interaction
ENSG00000178972	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1026110	chr4:144239825-144292148	Enhancers Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS Genic enhancers Strong transcription Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	11 gene(s)	inside rSNPs	diseases
2	nsv1018566	chr4:144284927-144298930	Weak transcription Enhancers Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	n/a
3	nsv437941	chr4:144285683-144295952	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers	TF binding region Chromatin interactive region	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:57 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:144272800-144299800	Weak transcription	Fetal Muscle Trunk	muscle
2	chr4:144277200-144290400	Weak transcription	Pancreas	Pancrea
3	chr4:144277400-144296800	Weak transcription	HSMMtube	muscle
4	chr4:144281200-144290000	Weak transcription	Fetal Stomach	stomach
5	chr4:144281200-144296800	Weak transcription	Fetal Muscle Leg	muscle
6	chr4:144281400-144296800	Weak transcription	Fetal Kidney	kidney
7	chr4:144281800-144293400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
8	chr4:144282000-144291200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr4:144282800-144290600	Weak transcription	Fetal Lung	lung
10	chr4:144283000-144290600	Weak transcription	Duodenum Smooth Muscle	Duodenum
11	chr4:144283000-144290800	Weak transcription	Primary B cells from cord blood	blood
12	chr4:144283000-144290800	Weak transcription	Gastric	stomach
13	chr4:144283000-144291200	Weak transcription	Ovary	ovary
14	chr4:144283000-144293400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:144283000-144295400	Weak transcription	Stomach Smooth Muscle	stomach
16	chr4:144283000-144302200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr4:144283200-144293400	Weak transcription	Placenta Amnion	Placenta Amnion
18	chr4:144284000-144293600	Weak transcription	Spleen	Spleen
19	chr4:144284000-144296600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr4:144284000-144296600	Weak transcription	Fetal Thymus	thymus
21	chr4:144284200-144287000	Weak transcription	Brain Anterior Caudate	brain
22	chr4:144284200-144295600	Weak transcription	Duodenum Mucosa	Duodenum
23	chr4:144284400-144290600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr4:144284400-144299400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
25	chr4:144284600-144288000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr4:144284600-144290000	Weak transcription	Rectal Mucosa Donor 31	rectum
27	chr4:144284600-144290000	Weak transcription	Sigmoid Colon	Sigmoid Colon
28	chr4:144284600-144290800	Weak transcription	Fetal Intestine Large	intestine
29	chr4:144284600-144291200	Weak transcription	Fetal Intestine Small	intestine
30	chr4:144284600-144295200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
31	chr4:144284600-144295200	Weak transcription	K562	blood
32	chr4:144284800-144290000	Weak transcription	Brain Angular Gyrus	brain
33	chr4:144284800-144295600	Weak transcription	Cortex derived primary cultured neurospheres	brain
34	chr4:144285000-144290000	Weak transcription	Small Intestine	intestine
35	chr4:144285000-144290400	Weak transcription	Skeletal Muscle Male	skeletal muscle
36	chr4:144285000-144290800	Weak transcription	Right Ventricle	heart
37	chr4:144285200-144287800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr4:144285200-144290000	Weak transcription	Left Ventricle	heart
39	chr4:144285200-144290000	Weak transcription	Lung	lung
40	chr4:144285200-144290000	Weak transcription	Psoas Muscle	Psoas
41	chr4:144285200-144290000	Weak transcription	Right Atrium	heart
42	chr4:144285200-144290600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
43	chr4:144285400-144290000	Weak transcription	Skeletal Muscle Female	skeletal muscle
44	chr4:144285800-144286600	Weak transcription	Colon Smooth Muscle	Colon
45	chr4:144285800-144288000	Weak transcription	HUES48 Cell Line	embryonic stem cell
46	chr4:144286000-144287800	Weak transcription	Brain Cingulate Gyrus	brain
47	chr4:144286000-144287800	Weak transcription	Brain Substantia Nigra	brain
48	chr4:144286000-144290600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
49	chr4:144286000-144291200	Weak transcription	Aorta	Aorta
50	chr4:144286000-144293400	Weak transcription	Breast Myoepithelial Primary Cells	Breast

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