Variant report

Variant	rs193043420
Chromosome Location	chr11:72151000-72151001
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:72150961..72153899-chr11:72155415..72157907,2	MCF-7	breast:
2	chr11:72150565..72152924-chr11:72165968..72167789,2	K562	blood:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832206	chr11:72006573-72176017	Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
2	esv1794740	chr11:72021720-72332931	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Strong transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	31 gene(s)	inside rSNPs	diseases
3	esv2762916	chr11:72147875-72160112	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv522492	chr11:72150828-72154529	Weak transcription Enhancers Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:72145600-72152000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr11:72145600-72152600	Weak transcription	Right Atrium	heart
3	chr11:72146000-72152000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
4	chr11:72146800-72151200	Weak transcription	Placenta	Placenta
5	chr11:72150200-72151000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr11:72150200-72151200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
7	chr11:72150200-72151600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
8	chr11:72150200-72151600	Enhancers	Primary neutrophils fromperipheralblood	blood
9	chr11:72150200-72151600	Enhancers	Muscle Satellite Cultured Cells	--
10	chr11:72150200-72151600	Enhancers	HMEC	breast
11	chr11:72150200-72151600	Enhancers	NHEK	skin
12	chr11:72150200-72152200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:72150200-72153000	Enhancers	Adipose Nuclei	Adipose
14	chr11:72150400-72151400	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr11:72150400-72151400	Enhancers	Osteobl	bone
16	chr11:72150400-72154800	Enhancers	Primary monocytes fromperipheralblood	blood
17	chr11:72150600-72151400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
18	chr11:72150600-72151600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr11:72150600-72152400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr11:72150800-72151000	Enhancers	Primary B cells from cord blood	blood
21	chr11:72150800-72151600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
22	chr11:72150800-72151600	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
23	chr11:72150800-72158000	Weak transcription	Hela-S3	cervix
24	chr11:72151000-72151400	Weak transcription	Primary B cells from cord blood	blood
25	chr11:72151000-72151600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links