Variant report

Variant	rs193081770
Chromosome Location	chr19:41570915-41570916
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ELF1	chr19:41570834-41571284	A549	lung:	n/a	n/a
2	SIX5	chr19:41570847-41571136	K562	blood:	n/a	n/a
3	SIX5	chr19:41570903-41571230	K562	blood:	n/a	n/a
4	CREB1	chr19:41570915-41571167	GM12878	blood:	n/a	n/a
5	SP1	chr19:41570844-41571237	H1-hESC	embryonic stem cell:	n/a	chr19:41571122-41571133
6	CREB1	chr19:41570836-41571219	HepG2	liver:	n/a	n/a
7	CREB1	chr19:41570788-41571351	H1-hESC	embryonic stem cell:	n/a	n/a
8	SP1	chr19:41570729-41571424	HCT-116	colon:	n/a	chr19:41571122-41571133
9	SIX5	chr19:41570776-41571292	H1-hESC	embryonic stem cell:	n/a	n/a
10	SIX5	chr19:41570882-41571225	K562	blood:	n/a	n/a
11	SIX5	chr19:41570603-41571459	A549	lung:	n/a	n/a
12	IRF1	chr19:41570887-41571254	K562	blood:	n/a	chr19:41571075-41571096 chr19:41571098-41571119
13	ETS1	chr19:41570739-41571328	A549	lung:	n/a	n/a
14	CREB1	chr19:41570843-41571298	K562	blood:	n/a	n/a
15	SIX5	chr19:41570791-41571274	H1-hESC	embryonic stem cell:	n/a	n/a
16	ETS1	chr19:41570844-41571226	A549	lung:	n/a	n/a
17	NFYB	chr19:41570823-41571310	GM12878	blood:	n/a	chr19:41571063-41571078
18	CREB1	chr19:41570912-41571196	A549	lung:	n/a	n/a
19	SP1	chr19:41570832-41571374	A549	lung:	n/a	chr19:41571122-41571133
20	CREB1	chr19:41570801-41571282	ECC-1	luminal epithelium:	n/a	n/a
21	SIX5	chr19:41570854-41571231	K562	blood:	n/a	n/a
22	HCFC1	chr19:41570825-41571262	K562	blood:	n/a	n/a
23	NFYB	chr19:41570885-41571404	K562	blood:	n/a	chr19:41571063-41571078
24	ATF1	chr19:41570900-41571220	K562	blood:	n/a	n/a
25	YY1	chr19:41570893-41571211	SK-N-SH_RA	brain:	n/a	n/a
26	YY1	chr19:41570896-41571200	A549	lung:	n/a	n/a
27	CREB1	chr19:41570806-41571284	H1-hESC	embryonic stem cell:	n/a	n/a
28	YY1	chr19:41570873-41571233	H1-hESC	embryonic stem cell:	n/a	n/a
29	SIX5	chr19:41570777-41571256	A549	lung:	n/a	n/a
30	NFYA	chr19:41570890-41571293	K562	blood:	n/a	chr19:41571066-41571084
31	CREB1	chr19:41570790-41571161	ECC-1	luminal epithelium:	n/a	n/a
32	CREB1	chr19:41570905-41571266	A549	lung:	n/a	n/a
33	SP1	chr19:41570863-41571305	H1-hESC	embryonic stem cell:	n/a	chr19:41571122-41571133
34	ETS1	chr19:41570875-41571245	K562	blood:	n/a	n/a
35	ZNF143	chr19:41570843-41571258	H1-hESC	embryonic stem cell:	n/a	n/a
36	SP1	chr19:41570732-41571416	HCT-116	colon:	n/a	chr19:41571122-41571133
37	SIX5	chr19:41570867-41571196	GM12878	blood:	n/a	n/a
38	ZNF143	chr19:41570835-41571238	K562	blood:	n/a	n/a
39	SIX5	chr19:41570875-41571172	GM12878	blood:	n/a	n/a
40	SP1	chr19:41570720-41571315	A549	lung:	n/a	chr19:41571122-41571133
41	ZNF143	chr19:41570863-41571229	GM12878	blood:	n/a	n/a
42	CREB1	chr19:41570828-41571179	HepG2	liver:	n/a	n/a
43	FOS	chr19:41570907-41571234	K562	blood:	n/a	n/a
44	CREB1	chr19:41570793-41571344	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr19:41563694..41565684-chr19:41568429..41571133,2	MCF-7	breast:

Variant related genes	Relation type
CYP2G2P	TF binding region

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1066637	chr19:41309211-41597896	Weak transcription Enhancers Genic enhancers Active TSS Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
2	nsv1065684	chr19:41516389-41644542	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv2491	chr19:41560948-41604222	Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links