Variant report

Variant	rs193091577
Chromosome Location	chr6:150813554-150813555
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:150812081..150813728-chr6:150830490..150832623,2	MCF-7	breast:
2	chr6:150807751..150809812-chr6:150811234..150814298,3	K562	blood:
3	chr6:150812964..150816383-chr6:150817541..150822095,5	K562	blood:

Variant related genes	Relation type
ENSG00000219622	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1020067	chr6:150730783-150870708	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv886772	chr6:150743364-151024280	Enhancers Active TSS Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
3	nsv970066	chr6:150813508-150814634	Flanking Active TSS Enhancers Weak transcription	Chromatin interactive region	1 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:150811200-150815800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr6:150811400-150813800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr6:150811400-150814000	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
4	chr6:150811400-150814800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr6:150811400-150815000	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
6	chr6:150811400-150815200	Enhancers	Fetal Muscle Leg	muscle
7	chr6:150811600-150813800	Enhancers	Primary T cells fromperipheralblood	blood
8	chr6:150811800-150813600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
9	chr6:150811800-150814000	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
10	chr6:150812000-150813600	Enhancers	Primary T regulatory cells fromperipheralblood	blood
11	chr6:150812000-150814800	Enhancers	NH-A	brain
12	chr6:150812200-150813600	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
13	chr6:150812200-150814200	Enhancers	Stomach Mucosa	stomach
14	chr6:150812400-150814800	Enhancers	HUVEC	blood vessel
15	chr6:150812600-150813800	Weak transcription	Fetal Muscle Trunk	muscle
16	chr6:150812600-150813800	Enhancers	NHEK	skin
17	chr6:150812800-150813800	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr6:150813000-150813600	Weak transcription	Gastric	stomach
19	chr6:150813000-150814000	Weak transcription	Muscle Satellite Cultured Cells	--
20	chr6:150813200-150813800	Weak transcription	Esophagus	oesophagus
21	chr6:150813200-150815200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
22	chr6:150813400-150813600	Enhancers	Sigmoid Colon	Sigmoid Colon
23	chr6:150813400-150814600	Flanking Active TSS	HMEC	breast

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