Variant report

Variant	rs193103577
Chromosome Location	chr18:9555867-9555868
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr18:9544173..9546289-chr18:9553833..9556141,2	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv916373	chr18:9026803-9592201	Strong transcription Weak transcription Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv833585	chr18:9401630-9597291	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	28 gene(s)	inside rSNPs	diseases
3	esv3693417	chr18:9512985-9693638	Genic enhancers Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Weak transcription Enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	esv3416241	chr18:9555800-9556518	Strong transcription Weak transcription ZNF genes & repeats	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:9535200-9556800	Weak transcription	Pancreatic Islets	Pancreatic Islet
2	chr18:9544000-9557000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
3	chr18:9544000-9570200	Strong transcription	Fetal Intestine Large	intestine
4	chr18:9544000-9575600	Strong transcription	Primary neutrophils fromperipheralblood	blood
5	chr18:9544200-9563600	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
6	chr18:9544600-9561600	Strong transcription	Stomach Smooth Muscle	stomach
7	chr18:9544600-9563600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
8	chr18:9544600-9563600	Strong transcription	Brain Cingulate Gyrus	brain
9	chr18:9544600-9564200	Strong transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr18:9544600-9564200	Strong transcription	Placenta	Placenta
11	chr18:9544800-9556800	Strong transcription	HMEC	breast
12	chr18:9544800-9557000	Strong transcription	Foreskin Melanocyte Primary Cells skin01	Skin
13	chr18:9544800-9562000	Strong transcription	Cortex derived primary cultured neurospheres	brain
14	chr18:9544800-9564600	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
15	chr18:9544800-9565000	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr18:9544800-9572200	Strong transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr18:9544800-9572400	Strong transcription	Primary T cells from cord blood	blood
18	chr18:9545000-9557000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr18:9545000-9557200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr18:9545000-9562600	Strong transcription	Duodenum Smooth Muscle	Duodenum
21	chr18:9545000-9563800	Strong transcription	Osteobl	bone
22	chr18:9545000-9564200	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
23	chr18:9545000-9564200	Strong transcription	Adipose Nuclei	Adipose
24	chr18:9545000-9564400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
25	chr18:9545200-9560400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
26	chr18:9545200-9561400	Strong transcription	Primary monocytes fromperipheralblood	blood
27	chr18:9545200-9561600	Strong transcription	Monocytes-CD14+_RO01746	blood
28	chr18:9545200-9563400	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
29	chr18:9545200-9572600	Strong transcription	Muscle Satellite Cultured Cells	--
30	chr18:9545400-9560000	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
31	chr18:9545400-9564000	Strong transcription	Foreskin Fibroblast Primary Cells skin02	Skin
32	chr18:9545800-9556200	Strong transcription	HepG2	liver
33	chr18:9545800-9563600	Strong transcription	Rectal Mucosa Donor 31	rectum
34	chr18:9545800-9564200	Strong transcription	Fetal Thymus	thymus
35	chr18:9545800-9565000	Strong transcription	Sigmoid Colon	Sigmoid Colon
36	chr18:9545800-9570200	Strong transcription	Duodenum Mucosa	Duodenum
37	chr18:9545800-9583600	Strong transcription	Primary T cells fromperipheralblood	blood
38	chr18:9545800-9595200	Strong transcription	Dnd41	blood
39	chr18:9546000-9557200	Strong transcription	NHEK	skin
40	chr18:9546000-9563800	Strong transcription	Rectal Mucosa Donor 29	rectum
41	chr18:9546200-9557600	Strong transcription	HUVEC	blood vessel
42	chr18:9546200-9557800	Strong transcription	Brain Substantia Nigra	brain
43	chr18:9546200-9559600	Strong transcription	Primary T helper cells PMA-I stimulated	--
44	chr18:9546200-9560200	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
45	chr18:9546200-9564200	Strong transcription	Left Ventricle	heart
46	chr18:9546400-9560200	Strong transcription	Brain Angular Gyrus	brain
47	chr18:9546400-9563600	Strong transcription	Skeletal Muscle Female	skeletal muscle
48	chr18:9547000-9559600	Strong transcription	K562	blood
49	chr18:9547000-9564000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
50	chr18:9547200-9559600	Strong transcription	Brain Dorsolateral Prefrontal Cortex	brain

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