Variant report

Variant	rs1931766
Chromosome Location	chr6:38176958-38176959
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:29)

rs_ID	r²[population]
rs1931762	1.00[CHB][hapmap]
rs1931765	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2050161	0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2395695	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2395696	0.82[AMR][1000 genomes];0.92[ASN][1000 genomes]
rs4299828	0.94[CEU][hapmap];0.85[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs4711527	0.88[CEU][hapmap];1.00[JPT][hapmap];0.92[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4714128	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs4714129	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4714130	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4714131	0.88[CEU][hapmap];0.84[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4714132	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4714133	0.92[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs6458045	1.00[CEU][hapmap]
rs6458047	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs66634926	0.87[AMR][1000 genomes]
rs6904507	0.94[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6915783	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6917654	0.88[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6924088	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6930118	0.94[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6935617	0.85[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs726160	1.00[JPT][hapmap]
rs7738411	0.88[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs873316	1.00[JPT][hapmap]
rs9380722	0.83[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs9380724	0.88[CEU][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs9462416	1.00[JPT][hapmap]
rs9470833	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.96[AMR][1000 genomes];0.85[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:9 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1028825	chr6:37495154-38278320	Enhancers Active TSS Weak transcription Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	19 gene(s)	inside rSNPs	diseases
2	nsv1021991	chr6:37893949-38738720	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv885817	chr6:38036420-39019503	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Strong transcription Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
4	nsv534620	chr6:38049585-38602064	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	9 gene(s)	inside rSNPs	diseases
5	nsv522522	chr6:38131442-38207636	Enhancers Strong transcription Weak transcription Flanking Active TSS Genic enhancers Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	1 gene(s)	inside rSNPs	diseases
6	nsv885818	chr6:38147745-38436317	Enhancers Weak transcription Strong transcription Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
7	nsv885819	chr6:38148770-38190439	Flanking Active TSS Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv520053	chr6:38154941-38207636	Enhancers Weak transcription Strong transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv885820	chr6:38166511-38468887	Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:33 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:38143600-38177200	Weak transcription	Ovary	ovary
2	chr6:38147400-38180400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
3	chr6:38155600-38177200	Weak transcription	Primary T helper cells fromperipheralblood	blood
4	chr6:38160200-38177600	Weak transcription	Esophagus	oesophagus
5	chr6:38160400-38177000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr6:38160400-38177600	Weak transcription	Primary T helper cells PMA-I stimulated	--
7	chr6:38160600-38177000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
8	chr6:38160600-38179600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr6:38160800-38201400	Weak transcription	Primary B cells from peripheral blood	blood
10	chr6:38162000-38179800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr6:38162600-38180000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
12	chr6:38166800-38194800	Weak transcription	Primary B cells from cord blood	blood
13	chr6:38167000-38210400	Weak transcription	Primary T cells from cord blood	blood
14	chr6:38173600-38177400	Weak transcription	Spleen	Spleen
15	chr6:38174200-38180200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
16	chr6:38175400-38177400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr6:38175400-38179600	Weak transcription	Psoas Muscle	Psoas
18	chr6:38175400-38180000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
19	chr6:38175600-38177400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr6:38175800-38178800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
21	chr6:38176000-38179600	Weak transcription	Skeletal Muscle Female	skeletal muscle
22	chr6:38176000-38184800	Enhancers	Fetal Muscle Leg	muscle
23	chr6:38176200-38177200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr6:38176200-38177800	Weak transcription	HUES48 Cell Line	embryonic stem cell
25	chr6:38176200-38178200	Weak transcription	Fetal Kidney	kidney
26	chr6:38176200-38181400	Enhancers	Fetal Stomach	stomach
27	chr6:38176800-38177600	Enhancers	Fetal Brain Female	brain
28	chr6:38176800-38177600	Enhancers	Fetal Intestine Small	intestine
29	chr6:38176800-38177800	Enhancers	Primary hematopoietic stem cells	blood
30	chr6:38176800-38177800	Enhancers	Fetal Muscle Trunk	muscle
31	chr6:38176800-38178000	Enhancers	Fetal Thymus	thymus
32	chr6:38176800-38178800	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
33	chr6:38176800-38179800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links