Variant report

Variant	rs1932002
Chromosome Location	chr10:99077679-99077680
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr10:99077329-99077894	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr10:99050343..99055587-chr10:99077475..99082102,7	MCF-7	breast:
2	chr10:99051582..99054067-chr10:99077169..99079188,3	K562	blood:
3	chr10:99051582..99055310-chr10:99077169..99083058,6	K562	blood:
4	chr10:99066690..99071389-chr10:99076606..99080814,5	MCF-7	breast:

Variant related genes	Relation type
FRAT1	TF binding region
ENSG00000237169	Chromatin interaction
ENSG00000269891	Chromatin interaction
ENSG00000213390	Chromatin interaction

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs915196	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv532232	chr10:98360775-99141797	Enhancers Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	53 gene(s)	inside rSNPs	diseases
2	nsv1041614	chr10:98928281-99083056	Weak transcription Strong transcription Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	20 gene(s)	inside rSNPs	diseases
3	nsv1045553	chr10:98944397-99122203	Strong transcription Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Genic enhancers Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
4	nsv540750	chr10:98944397-99122203	Bivalent Enhancer Active TSS Enhancers Flanking Active TSS Strong transcription Genic enhancers Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
5	nsv831952	chr10:98998344-99145924	Enhancers Active TSS Weak transcription Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
6	nsv895914	chr10:99006083-99131676	Active TSS Flanking Active TSS Enhancers Weak transcription Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv825533	chr10:99070570-99115599	Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Active TSS Enhancers Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:99073400-99078000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
2	chr10:99074800-99078200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr10:99075600-99078400	Weak transcription	Lung	lung
4	chr10:99076400-99078000	Flanking Active TSS	Primary neutrophils fromperipheralblood	blood
5	chr10:99077000-99078200	Enhancers	Liver	Liver
6	chr10:99077200-99078000	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr10:99077200-99078200	Enhancers	Adipose Nuclei	Adipose
8	chr10:99077400-99077800	Enhancers	K562	blood
9	chr10:99077400-99078000	Active TSS	Primary B cells from cord blood	blood
10	chr10:99077400-99078000	Enhancers	Primary T helper naive cells fromperipheralblood	blood
11	chr10:99077400-99078000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr10:99077400-99078200	Enhancers	HepG2	liver
13	chr10:99077600-99077800	Bivalent Enhancer	iPS-18 Cell Line	embryonic stem cell
14	chr10:99077600-99077800	Flanking Active TSS	Primary T cells from cord blood	blood
15	chr10:99077600-99077800	Flanking Active TSS	Primary hematopoietic stem cells	blood
16	chr10:99077600-99078000	Flanking Active TSS	Primary monocytes fromperipheralblood	blood
17	chr10:99077600-99078200	Enhancers	Primary T cells fromperipheralblood	blood
18	chr10:99077600-99078200	Enhancers	Primary T helper naive cells from peripheral blood	blood
19	chr10:99077600-99078200	Enhancers	Primary T helper cells PMA-I stimulated	--
20	chr10:99077600-99078200	Enhancers	Primary T helper cells fromperipheralblood	blood
21	chr10:99077600-99078200	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr10:99077600-99078200	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
23	chr10:99077600-99078200	Enhancers	Placenta	Placenta
24	chr10:99077600-99078200	Enhancers	Fetal Thymus	thymus
25	chr10:99077600-99078400	Enhancers	Primary hematopoietic stem cells short term culture	blood
26	chr10:99077600-99078400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
27	chr10:99077600-99078400	Enhancers	Primary T killer naive cells fromperipheralblood	blood
28	chr10:99077600-99079800	Active TSS	Fetal Intestine Large	intestine
29	chr10:99077600-99079800	Active TSS	Hela-S3	cervix
30	chr10:99077600-99080200	Active TSS	Brain Hippocampus Middle	brain

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