Variant report

Variant	rs193237921
Chromosome Location	chr11:92900139-92900140
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:11 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1039134	chr11:92790000-93219942	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv898176	chr11:92877533-92965312	Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv898177	chr11:92877533-92971874	Strong transcription Flanking Active TSS Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
4	nsv898178	chr11:92881933-92949447	Enhancers Active TSS ZNF genes & repeats Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
5	nsv898179	chr11:92881933-92956873	Flanking Active TSS Enhancers Weak transcription Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
6	nsv1047828	chr11:92886648-92915055	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
7	nsv1045544	chr11:92889187-92915055	Weak transcription Strong transcription ZNF genes & repeats Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
8	nsv1041794	chr11:92893654-92915055	ZNF genes & repeats Strong transcription Weak transcription Enhancers Genic enhancers	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
9	nsv818858	chr11:92898342-92932229	Flanking Active TSS Weak transcription Active TSS Enhancers Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
10	esv2757465	chr11:92898342-92934137	Weak transcription Strong transcription Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases
11	esv2759853	chr11:92898342-92934137	ZNF genes & repeats Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:107 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:92868400-92914600	Weak transcription	Brain Substantia Nigra	brain
2	chr11:92875400-92910400	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:92876600-92900400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr11:92876600-92910600	Weak transcription	Sigmoid Colon	Sigmoid Colon
5	chr11:92876800-92910600	Weak transcription	Lung	lung
6	chr11:92877000-92911400	Weak transcription	Osteobl	bone
7	chr11:92877800-92915000	Weak transcription	Muscle Satellite Cultured Cells	--
8	chr11:92878400-92910600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr11:92879000-92900200	Weak transcription	Fetal Muscle Leg	muscle
10	chr11:92879000-92910800	Weak transcription	HSMMtube	muscle
11	chr11:92879600-92910000	Weak transcription	Fetal Brain Male	brain
12	chr11:92879600-92910800	Weak transcription	HMEC	breast
13	chr11:92882000-92910600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr11:92885800-92910000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:92888400-92900600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr11:92889000-92900200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr11:92889600-92902200	Weak transcription	Fetal Intestine Large	intestine
18	chr11:92889800-92900200	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
19	chr11:92889800-92911200	Weak transcription	Brain Inferior Temporal Lobe	brain
20	chr11:92889800-92913600	Weak transcription	Spleen	Spleen
21	chr11:92890400-92901400	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
22	chr11:92890400-92901800	Strong transcription	HUES64 Cell Line	embryonic stem cell
23	chr11:92890400-92910000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr11:92890600-92901400	Strong transcription	Dnd41	blood
25	chr11:92890600-92911600	Weak transcription	Colon Smooth Muscle	Colon
26	chr11:92890800-92900800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:92891200-92903800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr11:92891400-92900400	Weak transcription	GM12878-XiMat	blood
29	chr11:92891600-92925400	Weak transcription	Fetal Heart	heart
30	chr11:92891800-92910800	Weak transcription	Right Ventricle	heart
31	chr11:92891800-92929800	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
32	chr11:92892000-92910800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
33	chr11:92892400-92901400	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr11:92892600-92901000	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
35	chr11:92892600-92902400	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr11:92892600-92910400	Weak transcription	Fetal Muscle Trunk	muscle
37	chr11:92892800-92901400	Strong transcription	Primary B cells from cord blood	blood
38	chr11:92893000-92900800	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
39	chr11:92893200-92901400	Strong transcription	HUES6 Cell Line	embryonic stem cell
40	chr11:92893200-92910600	Weak transcription	Rectal Mucosa Donor 29	rectum
41	chr11:92893600-92910400	Weak transcription	Skeletal Muscle Female	skeletal muscle
42	chr11:92893800-92910000	Weak transcription	Cortex derived primary cultured neurospheres	brain
43	chr11:92894000-92901400	Strong transcription	HUES48 Cell Line	embryonic stem cell
44	chr11:92894400-92900800	Strong transcription	iPS-20b Cell Line	embryonic stem cell
45	chr11:92894800-92900600	Weak transcription	H9 Cell Line	embryonic stem cell
46	chr11:92895000-92910600	Weak transcription	Skeletal Muscle Male	skeletal muscle
47	chr11:92895400-92920000	Weak transcription	Psoas Muscle	Psoas
48	chr11:92895400-92921400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr11:92895600-92903200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
50	chr11:92895800-92910600	Weak transcription	Pancreas	Pancrea

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links