Variant report

Variant	rs193280085
Chromosome Location	chr11:48032733-48032734
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:48031281..48033125-chr11:48036287..48038238,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254879	Chromatin interaction

Extended variants
information (count: 17 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:17 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1052397	chr11:47675470-48594256	Weak transcription Strong transcription Genic enhancers Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	97 gene(s)	inside rSNPs	diseases
2	nsv530620	chr11:47765455-48664555	Weak transcription Genic enhancers Enhancers Flanking Active TSS Strong transcription Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	93 gene(s)	inside rSNPs	diseases
3	nsv1036992	chr11:47794621-48666024	Strong transcription Flanking Active TSS Enhancers Weak transcription Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	54 gene(s)	inside rSNPs	diseases
4	nsv897326	chr11:47891334-48035474	Flanking Bivalent TSS/Enh Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Bivalent Enhancer Genic enhancers Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv1036451	chr11:47902321-48616646	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
6	nsv541037	chr11:47902321-48616646	Enhancers Strong transcription Genic enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
7	nsv1047490	chr11:47916708-48388686	Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	15 gene(s)	inside rSNPs	diseases
8	nsv1044266	chr11:47929586-48276132	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Strong transcription Genic enhancers Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
9	nsv541038	chr11:47929586-48276132	Weak transcription Enhancers ZNF genes & repeats Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	10 gene(s)	inside rSNPs	diseases
10	nsv1053145	chr11:47967902-48086950	Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Strong transcription Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
11	nsv870381	chr11:47989434-48142648	Enhancers Bivalent Enhancer Weak transcription Bivalent/Poised TSS Flanking Active TSS Strong transcription Genic enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases
12	esv3396029	chr11:47993857-48241494	Weak transcription Strong transcription Transcr. at gene 5' and 3' Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	6 gene(s)	inside rSNPs	diseases
13	nsv528641	chr11:48004369-48043053	Enhancers Weak transcription Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
14	nsv897327	chr11:48004369-48911660	ZNF genes & repeats Enhancers Weak transcription Genic enhancers Strong transcription Flanking Active TSS Transcr. at gene 5' and 3' Active TSS Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
15	nsv869124	chr11:48014539-48783113	Enhancers Weak transcription Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	26 gene(s)	inside rSNPs	diseases
16	nsv1051805	chr11:48016488-48378048	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
17	nsv428573	chr11:48032457-48152344	Genic enhancers Weak transcription ZNF genes & repeats Enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:48018800-48042000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
2	chr11:48025000-48045200	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr11:48026000-48039200	Weak transcription	Fetal Kidney	kidney
4	chr11:48026400-48039200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
5	chr11:48027400-48037600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr11:48027400-48044000	Enhancers	Primary T cells fromperipheralblood	blood
7	chr11:48027600-48034800	Weak transcription	Small Intestine	intestine
8	chr11:48027800-48037600	Weak transcription	H1 Cell Line	embryonic stem cell
9	chr11:48027800-48037800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
10	chr11:48027800-48039000	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
11	chr11:48028000-48032800	Weak transcription	H9 Cell Line	embryonic stem cell
12	chr11:48028000-48034000	Weak transcription	Fetal Intestine Large	intestine
13	chr11:48028000-48034200	Weak transcription	Primary hematopoietic stem cells	blood
14	chr11:48028000-48034600	Weak transcription	Fetal Intestine Small	intestine
15	chr11:48028000-48038800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
16	chr11:48028200-48033800	Weak transcription	Placenta	Placenta
17	chr11:48028200-48034000	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr11:48028200-48034800	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr11:48028400-48032800	Weak transcription	Gastric	stomach
20	chr11:48028400-48033400	Enhancers	Primary T regulatory cells fromperipheralblood	blood
21	chr11:48028400-48034000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr11:48028400-48034800	Weak transcription	Brain Angular Gyrus	brain
23	chr11:48028400-48034800	Weak transcription	Fetal Muscle Leg	muscle
24	chr11:48028400-48034800	Weak transcription	Right Atrium	heart
25	chr11:48028400-48038800	Weak transcription	Cortex derived primary cultured neurospheres	brain
26	chr11:48028400-48039200	Weak transcription	Fetal Stomach	stomach
27	chr11:48028600-48033600	Weak transcription	Brain Anterior Caudate	brain
28	chr11:48028600-48033600	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr11:48028600-48033600	Weak transcription	Fetal Heart	heart
30	chr11:48028600-48033800	Weak transcription	NH-A	brain
31	chr11:48028600-48034800	Weak transcription	Colon Smooth Muscle	Colon
32	chr11:48028600-48035200	Weak transcription	Duodenum Smooth Muscle	Duodenum
33	chr11:48028600-48035600	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr11:48029400-48032800	Weak transcription	Primary T cells from cord blood	blood
35	chr11:48029400-48033800	Weak transcription	Brain Substantia Nigra	brain
36	chr11:48029400-48034000	Weak transcription	Duodenum Mucosa	Duodenum
37	chr11:48029400-48034600	Weak transcription	Stomach Mucosa	stomach
38	chr11:48029400-48034800	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
39	chr11:48029600-48032800	Weak transcription	Brain Hippocampus Middle	brain
40	chr11:48029600-48033600	Weak transcription	Left Ventricle	heart
41	chr11:48029600-48033800	Weak transcription	Sigmoid Colon	Sigmoid Colon
42	chr11:48029600-48034000	Weak transcription	NHDF-Ad	bronchial
43	chr11:48029600-48034600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
44	chr11:48029600-48034600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
45	chr11:48029600-48034600	Weak transcription	NHLF	lung
46	chr11:48029600-48034800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
47	chr11:48029600-48034800	Weak transcription	Adipose Nuclei	Adipose
48	chr11:48029600-48035000	Weak transcription	Thymus	Thymus
49	chr11:48029800-48033800	Weak transcription	Liver	Liver
50	chr11:48029800-48034600	Weak transcription	Muscle Satellite Cultured Cells	--

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links