Variant report

Variant	rs193280834
Chromosome Location	chr15:40414941-40414942
allele	A/C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:40401545..40403249-chr15:40412474..40415066,2	MCF-7	breast:
2	chr15:40408512..40410624-chr15:40413649..40415677,2	K562	blood:

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv530816	chr15:40003136-40586792	Bivalent Enhancer Strong transcription Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Genic enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	63 gene(s)	inside rSNPs	diseases
2	nsv428635	chr15:40274500-40436293	Enhancers Flanking Active TSS Weak transcription Active TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases
3	esv3364812	chr15:40414858-40427614	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:40402000-40418600	Weak transcription	Right Atrium	heart
2	chr15:40408400-40416800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr15:40408400-40417000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr15:40408600-40416600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
5	chr15:40409200-40415200	Weak transcription	Rectal Mucosa Donor 31	rectum
6	chr15:40411400-40416600	Weak transcription	NHEK	skin
7	chr15:40414000-40415200	Enhancers	Primary monocytes fromperipheralblood	blood
8	chr15:40414000-40415600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr15:40414000-40415600	Enhancers	Primary hematopoietic stem cells short term culture	blood
10	chr15:40414200-40415000	Enhancers	HUES48 Cell Line	embryonic stem cell
11	chr15:40414200-40415000	Enhancers	HUES6 Cell Line	embryonic stem cell
12	chr15:40414200-40415000	Enhancers	iPS-15b Cell Line	embryonic stem cell
13	chr15:40414200-40415400	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr15:40414200-40415600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr15:40414200-40416000	Enhancers	Placenta	Placenta
16	chr15:40414400-40415400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr15:40414400-40415600	Enhancers	Primary neutrophils fromperipheralblood	blood
18	chr15:40414600-40415600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
19	chr15:40414600-40415600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr15:40414600-40416600	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr15:40414800-40416600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links