Variant report

Variant	rs1933477
Chromosome Location	chr1:210352986-210352987
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 57 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:56)

rs_ID	r²[population]
rs10746423	0.83[AMR][1000 genomes]
rs10779523	0.83[AFR][1000 genomes];0.86[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs10779525	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs10779526	0.94[EUR][1000 genomes]
rs11119425	0.94[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs11119427	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11119428	0.88[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11119429	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12129172	0.93[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1334567	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs1334568	0.83[AMR][1000 genomes]
rs1387933	0.86[AMR][1000 genomes]
rs1413695	0.92[AFR][1000 genomes];0.93[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1490419	0.83[AFR][1000 genomes];0.87[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs227169	0.82[AMR][1000 genomes]
rs227172	0.89[AMR][1000 genomes]
rs227174	0.86[AMR][1000 genomes]
rs227179	0.86[AMR][1000 genomes]
rs227191	0.82[AMR][1000 genomes]
rs227193	0.82[AMR][1000 genomes]
rs227196	0.82[AMR][1000 genomes]
rs227204	0.83[AMR][1000 genomes]
rs227205	0.83[AMR][1000 genomes]
rs227209	0.87[AMR][1000 genomes]
rs227211	0.83[AMR][1000 genomes]
rs227217	0.81[AMR][1000 genomes]
rs227218	0.82[AMR][1000 genomes]
rs227219	0.82[AMR][1000 genomes]
rs2485890	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2485891	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2485892	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2485893	0.94[EUR][1000 genomes]
rs2485894	0.83[AMR][1000 genomes];0.92[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs2494168	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2494169	0.95[AFR][1000 genomes];0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2494189	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2494190	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2494191	0.85[AFR][1000 genomes]
rs2636376	0.86[AMR][1000 genomes]
rs2743889	0.86[AMR][1000 genomes]
rs4421592	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4589109	0.84[AFR][1000 genomes]
rs4844947	0.83[AFR][1000 genomes];0.88[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs4844954	0.82[AFR][1000 genomes]
rs6540580	0.83[AMR][1000 genomes]
rs6540584	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs6656855	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs701947	0.86[AMR][1000 genomes]
rs701948	0.81[AMR][1000 genomes]
rs7519750	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]
rs7541569	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs846551	0.82[AMR][1000 genomes]
rs846552	0.82[AMR][1000 genomes]
rs846554	0.83[AMR][1000 genomes]
rs846555	0.83[AMR][1000 genomes]
rs9659395	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1014034	chr1:209759648-210501731	Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:210339400-210361200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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