Variant report

Variant	rs1933973
Chromosome Location	chr4:26459361-26459362
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10034033	0.89[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs11726723	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3109848	0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7691160	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs946347	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv878767	chr4:26451326-26463490	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
2	nsv10468	chr4:26453879-26462957	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a
3	esv2757048	chr4:26456267-26461885	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	n/a
4	esv2759237	chr4:26456267-26461885	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	n/a

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:26445000-26461000	Weak transcription	HSMM	muscle
2	chr4:26453200-26459600	Weak transcription	Muscle Satellite Cultured Cells	--
3	chr4:26454800-26460800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
4	chr4:26456200-26459800	Weak transcription	HSMMtube	muscle
5	chr4:26457400-26461200	Enhancers	Colon Smooth Muscle	Colon
6	chr4:26458000-26461200	Enhancers	Fetal Muscle Leg	muscle
7	chr4:26458000-26466000	Enhancers	Fetal Stomach	stomach
8	chr4:26458200-26459400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
9	chr4:26458400-26461400	Enhancers	Primary hematopoietic stem cells	blood
10	chr4:26458600-26459600	Enhancers	Primary hematopoietic stem cells short term culture	blood
11	chr4:26458600-26459800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr4:26458600-26461200	Enhancers	Primary T cells from cord blood	blood
13	chr4:26458600-26462000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr4:26458800-26461000	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr4:26458800-26461800	Enhancers	Fetal Thymus	thymus
16	chr4:26459000-26460400	Enhancers	Fetal Lung	lung
17	chr4:26459000-26460400	Enhancers	Dnd41	blood
18	chr4:26459000-26460800	Enhancers	Stomach Smooth Muscle	stomach
19	chr4:26459000-26462000	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
20	chr4:26459200-26460200	Enhancers	Thymus	Thymus
21	chr4:26459200-26461000	Enhancers	Primary T killer naive cells fromperipheralblood	blood
22	chr4:26459200-26461000	Enhancers	Osteobl	bone

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