Variant report

Variant	rs1935477
Chromosome Location	chr6:119675453-119675454
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr6:119674592..119677137-chr6:119682701..119685226,2	K562	blood:
2	chr6:119668152..119672285-chr6:119673337..119678807,6	MCF-7	breast:
3	chr6:119671114..119672646-chr6:119674979..119676830,2	K562	blood:
4	chr6:119671114..119673053-chr6:119674972..119676830,3	K562	blood:
5	chr6:119674592..119678182-chr6:119682701..119685453,4	K562	blood:
6	chr6:119668881..119671932-chr6:119672214..119675857,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000111885	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12206472	1.00[YRI][hapmap];0.92[AFR][1000 genomes]
rs17588322	0.88[CHB][hapmap]
rs3778107	0.89[CHB][hapmap]
rs3798657	0.80[ASN][1000 genomes]
rs72970359	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1025995	chr6:119407742-119709548	Enhancers Flanking Active TSS Bivalent/Poised TSS Strong transcription Weak transcription Active TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv3447598	chr6:119558591-120119384	Weak transcription Enhancers Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
3	esv3389526	chr6:119558598-120190087	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Active TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
4	esv1802628	chr6:119647135-119678881	Enhancers Flanking Active TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:119671800-119689200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr6:119672400-119675600	Enhancers	Fetal Kidney	kidney
3	chr6:119672400-119675800	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr6:119672400-119676200	Enhancers	Primary B cells from cord blood	blood
5	chr6:119673400-119676000	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
6	chr6:119673400-119676200	Enhancers	Primary hematopoietic stem cells	blood
7	chr6:119673400-119677200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr6:119673400-119678200	Weak transcription	NHDF-Ad	bronchial
9	chr6:119673400-119690000	Weak transcription	K562	blood
10	chr6:119673600-119680800	Weak transcription	Fetal Heart	heart
11	chr6:119673600-119687200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
12	chr6:119674400-119675600	Enhancers	HUES48 Cell Line	embryonic stem cell
13	chr6:119674400-119676000	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr6:119674400-119676000	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr6:119674400-119677600	Enhancers	Primary monocytes fromperipheralblood	blood
16	chr6:119674600-119677000	Enhancers	Primary B cells from peripheral blood	blood
17	chr6:119674800-119675600	Enhancers	iPS-18 Cell Line	embryonic stem cell
18	chr6:119674800-119676400	Enhancers	Pancreatic Islets	Pancreatic Islet
19	chr6:119675200-119675600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
20	chr6:119675200-119677000	Enhancers	Adipose Nuclei	Adipose
21	chr6:119675200-119677600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
22	chr6:119675200-119688800	Weak transcription	Brain Anterior Caudate	brain
23	chr6:119675400-119675800	Weak transcription	Primary neutrophils fromperipheralblood	blood
24	chr6:119675400-119676000	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
25	chr6:119675400-119676000	Enhancers	GM12878-XiMat	blood
26	chr6:119675400-119679200	Weak transcription	Dnd41	blood

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