Variant report

Variant	rs1935787
Chromosome Location	chr6:15985534-15985535
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:10)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

No data

(count:10 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:15905196..15908263-chr6:15984889..15987796,3	K562	blood:
2	chr6:15984580..15986448-chr6:15986489..15989172,2	K562	blood:
3	chr6:15980977..15982793-chr6:15984089..15986958,2	K562	blood:
4	chr6:15980977..15983106-chr6:15984089..15987609,3	K562	blood:
5	chr6:15983552..15985783-chr6:16001742..16003569,2	K562	blood:
6	chr6:15974189..15975999-chr6:15983759..15985809,2	K562	blood:
7	chr6:15901497..15903351-chr6:15985477..15987001,2	K562	blood:
8	chr6:15984876..15986448-chr6:15986489..15989397,2	K562	blood:
9	chr6:15985140..15989289-chr6:16126563..16131391,7	K562	blood:
10	chr6:15984163..15986558-chr6:16129136..16130861,2	K562	blood:

No data

No data

No data

Extended variants
information (count: 19 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:19)

rs_ID	r²[population]
rs10949321	0.81[CEU][hapmap]
rs10949329	0.89[CEU][hapmap];0.88[TSI][hapmap];0.82[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs12204956	0.81[CEU][hapmap];0.80[EUR][1000 genomes]
rs12665492	0.92[YRI][hapmap]
rs1539422	0.81[CEU][hapmap]
rs1935788	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2066402	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2876401	0.85[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62388493	0.83[EUR][1000 genomes]
rs6459439	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6459440	1.00[CHB][hapmap];0.89[CHD][hapmap];0.80[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.87[TSI][hapmap];0.87[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs6900117	1.00[CHB][hapmap];1.00[JPT][hapmap];0.95[ASN][1000 genomes]
rs6923118	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs6923883	0.80[AMR][1000 genomes];0.95[ASN][1000 genomes]
rs6924791	1.00[CHB][hapmap];0.94[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes];0.97[ASN][1000 genomes]
rs7766233	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs9296998	0.90[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9296999	1.00[CHB][hapmap];0.89[CHD][hapmap];1.00[JPT][hapmap];0.91[MEX][hapmap];0.81[TSI][hapmap];0.80[AMR][1000 genomes];0.94[ASN][1000 genomes]
rs9396628	1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs1935787	MYLIP	cis	parietal	SCAN
rs1935787	MYLIP	cis	cerebellum	SCAN
rs1935787	ID4	cis	parietal	SCAN

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:15978000-15986400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
2	chr6:15978800-15986200	Weak transcription	K562	blood
3	chr6:15981400-15986200	Weak transcription	Esophagus	oesophagus
4	chr6:15985200-15985800	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr6:15985400-15985800	Enhancers	iPS-20b Cell Line	embryonic stem cell
6	chr6:15985400-15985800	Enhancers	Fetal Lung	lung

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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