Variant report

Variant	rs1936050
Chromosome Location	chr1:112899446-112899447
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs1317812	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs1343275	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1343276	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2370863	0.81[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2488778	0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[ASN][1000 genomes]
rs2488779	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[YRI][hapmap];0.98[ASN][1000 genomes]
rs2488780	0.86[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.89[YRI][hapmap];0.88[AFR][1000 genomes];0.85[AMR][1000 genomes];0.86[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2488782	0.84[AMR][1000 genomes];0.98[ASN][1000 genomes]
rs2488783	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2492526	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3005785	0.94[ASN][1000 genomes]
rs3005789	0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv13370	chr1:112693290-113246263	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	87 gene(s)	inside rSNPs	diseases
2	nsv508526	chr1:112839396-112915215	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv872156	chr1:112886545-112927912	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:112886800-112901400	Weak transcription	Pancreas	Pancrea
2	chr1:112897200-112899800	Weak transcription	Duodenum Mucosa	Duodenum
3	chr1:112898800-112899600	Enhancers	Placenta	Placenta
4	chr1:112899000-112899600	Enhancers	Ovary	ovary
5	chr1:112899200-112899600	Enhancers	GM12878-XiMat	blood
6	chr1:112899200-112901200	Enhancers	Adipose Nuclei	Adipose
7	chr1:112899200-112901200	Weak transcription	Brain Substantia Nigra	brain
8	chr1:112899200-112901200	Weak transcription	Spleen	Spleen
9	chr1:112899200-112902000	Weak transcription	Sigmoid Colon	Sigmoid Colon
10	chr1:112899200-112902400	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr1:112899400-112899600	Enhancers	Fetal Muscle Trunk	muscle
12	chr1:112899400-112899600	Bivalent Enhancer	Lung	lung
13	chr1:112899400-112899600	Enhancers	Thymus	Thymus
14	chr1:112899400-112899600	Enhancers	HSMMtube	muscle
15	chr1:112899400-112899800	Enhancers	Skeletal Muscle Female	skeletal muscle
16	chr1:112899400-112900200	Bivalent Enhancer	Fetal Stomach	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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