Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:161315007..161317430-chr6:161326001..161327653,2	K562	blood:

Variant related genes	Relation type
ENSG00000220913	Chromatin interaction

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11970528	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs1247298	0.93[CHB][hapmap];0.87[JPT][hapmap]
rs1247299	1.00[CEU][hapmap];0.87[CHB][hapmap];0.87[JPT][hapmap];0.82[EUR][1000 genomes]
rs1247308	0.93[JPT][hapmap]
rs1247309	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs1247313	0.87[JPT][hapmap]
rs1247322	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs1247323	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs1247325	0.87[CHB][hapmap];0.81[JPT][hapmap]
rs1247327	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs1247330	0.86[CHB][hapmap]
rs1247360	0.86[CHB][hapmap];0.87[JPT][hapmap]
rs1247361	0.87[CHB][hapmap];0.87[JPT][hapmap]
rs1247363	0.86[CHB][hapmap];0.93[JPT][hapmap]
rs2465834	0.87[JPT][hapmap]
rs2465869	0.86[AFR][1000 genomes];0.86[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs2465870	0.84[AFR][1000 genomes];0.86[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs2465876	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2465877	1.00[CHB][hapmap];0.94[JPT][hapmap]
rs2489955	0.93[CHB][hapmap];1.00[JPT][hapmap]
rs2489956	0.92[CEU][hapmap];1.00[CHB][hapmap];0.94[JPT][hapmap];0.88[EUR][1000 genomes]
rs9364580	1.00[CHB][hapmap];0.94[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3352911	chr6:161140543-161324358	Weak transcription Enhancers Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv830853	chr6:161180005-161376481	Enhancers Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	esv2422347	chr6:161211171-161442377	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	esv1837673	chr6:161216608-161318009	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:161302800-161316600	Weak transcription	Ovary	ovary
2	chr6:161310800-161315800	Weak transcription	HUES64 Cell Line	embryonic stem cell
3	chr6:161310800-161316400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
4	chr6:161311000-161316400	Weak transcription	HUES48 Cell Line	embryonic stem cell
5	chr6:161311000-161320600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
6	chr6:161311000-161321000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr6:161313000-161316200	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr6:161313000-161321000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
9	chr6:161313200-161319000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr6:161315600-161316800	Enhancers	ES-I3 Cell Line	embryonic stem cell

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