Variant report

Variant	rs1938645
Chromosome Location	chr11:58097012-58097013
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 58 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:55)

rs_ID	r²[population]
rs10750895	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10750898	0.87[EUR][1000 genomes]
rs10792165	0.88[EUR][1000 genomes]
rs10896748	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10896749	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10896754	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs10896755	0.88[EUR][1000 genomes]
rs10896760	0.87[EUR][1000 genomes]
rs10896761	0.87[EUR][1000 genomes]
rs11229349	0.83[EUR][1000 genomes]
rs11229352	0.88[AMR][1000 genomes];0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11229353	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11229355	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11229365	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11229366	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11229396	0.85[EUR][1000 genomes]
rs11229397	0.85[EUR][1000 genomes]
rs11607488	0.85[EUR][1000 genomes]
rs12278357	0.85[EUR][1000 genomes]
rs12575804	0.85[EUR][1000 genomes]
rs12788786	0.85[EUR][1000 genomes]
rs12789701	0.85[EUR][1000 genomes]
rs12798255	0.85[EUR][1000 genomes]
rs12804134	0.85[EUR][1000 genomes]
rs1938637	0.87[EUR][1000 genomes]
rs1938646	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1938647	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1938662	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1938663	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1938664	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2000486	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2003231	0.85[EUR][1000 genomes]
rs2186407	0.88[EUR][1000 genomes]
rs2226414	0.89[EUR][1000 genomes]
rs35542119	0.85[EUR][1000 genomes]
rs3887001	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4085405	0.87[EUR][1000 genomes]
rs4127348	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4127353	0.88[EUR][1000 genomes]
rs4323891	0.87[EUR][1000 genomes]
rs4439530	0.88[EUR][1000 genomes]
rs4544018	0.88[EUR][1000 genomes]
rs4561231	0.87[EUR][1000 genomes]
rs4611223	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs4611224	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4938893	0.88[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6591469	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7102222	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7110266	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7112318	0.85[EUR][1000 genomes]
rs7112578	0.83[EUR][1000 genomes]
rs7117244	0.89[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs734776	0.87[EUR][1000 genomes]
rs754681	0.87[EUR][1000 genomes]
rs7926741	0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054205	chr11:57544264-58358509	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases
2	nsv1039453	chr11:57924680-58119650	Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
3	nsv541051	chr11:57924680-58119650	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:58084200-58102400	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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