Variant report

Variant	rs1938800
Chromosome Location	chr11:75256122-75256123
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 4 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10899091	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10899092	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236448	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11236449	0.88[CHD][hapmap]
rs11236452	0.88[CHD][hapmap];0.82[TSI][hapmap];0.90[ASN][1000 genomes]
rs11236454	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12291026	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12361128	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs55702115	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56232370	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs591627	0.81[CEU][hapmap];0.87[TSI][hapmap]
rs617617	0.82[JPT][hapmap]
rs7109103	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7110149	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7128888	1.00[CHB][hapmap];1.00[CHD][hapmap];0.89[GIH][hapmap];1.00[JPT][hapmap];0.82[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129014	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7129150	1.00[CHB][hapmap];1.00[JPT][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs947844	0.88[CHD][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3381903	chr11:75123498-75587233	Bivalent Enhancer Strong transcription Enhancers Bivalent/Poised TSS Genic enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	81 gene(s)	inside rSNPs	diseases
2	nsv897923	chr11:75129007-75302855	Active TSS Weak transcription Bivalent Enhancer Enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

mRNA abundance (count:4)

SNP	Gene	Cis/trans	Tissue	Source
rs1938800	P2RY2	cis	cerebellum	SCAN
rs1938800	SNORD15A	cis	parietal	SCAN
rs1938800	AQP11	cis	parietal	SCAN
rs1938800	GDPD5	cis	cerebellum	SCAN

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:75237800-75258800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:75243600-75258400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
3	chr11:75246400-75265800	Weak transcription	Right Atrium	heart
4	chr11:75248800-75258800	Weak transcription	ES-I3 Cell Line	embryonic stem cell
5	chr11:75252600-75257200	Weak transcription	Placenta	Placenta
6	chr11:75254200-75258200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr11:75255000-75258400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:75255400-75258000	Weak transcription	K562	blood
9	chr11:75255800-75258800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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