Variant report

Variant	rs1938967
Chromosome Location	chr11:105662045-105662046
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 42 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10128540	0.92[EUR][1000 genomes]
rs10502062	0.91[EUR][1000 genomes]
rs10502063	0.82[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs10736647	0.91[EUR][1000 genomes]
rs10736648	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs10750734	0.83[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs10791770	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs10791774	0.91[EUR][1000 genomes]
rs10791775	0.84[EUR][1000 genomes]
rs10895875	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs10895876	0.87[EUR][1000 genomes]
rs11226843	0.90[EUR][1000 genomes]
rs11226848	0.94[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs11226849	0.81[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11226851	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1938960	0.85[EUR][1000 genomes]
rs1938966	0.88[EUR][1000 genomes]
rs1938968	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1939148	0.87[EUR][1000 genomes]
rs1954763	0.92[EUR][1000 genomes]
rs2186598	0.90[EUR][1000 genomes]
rs4363555	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4636626	0.84[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs582570	0.88[EUR][1000 genomes]
rs596913	0.86[EUR][1000 genomes]
rs618301	0.81[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs621632	0.86[EUR][1000 genomes]
rs630567	0.82[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs646007	0.82[EUR][1000 genomes]
rs650951	0.87[EUR][1000 genomes]
rs658965	0.86[EUR][1000 genomes]
rs668120	0.88[EUR][1000 genomes]
rs682708	0.86[EUR][1000 genomes]
rs685424	0.88[EUR][1000 genomes]
rs7115196	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs7129691	0.91[EUR][1000 genomes]
rs748008	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs7933863	0.91[EUR][1000 genomes]
rs7938716	0.91[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832256	chr11:105516593-105689326	Weak transcription Enhancers Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	esv1829261	chr11:105614894-105698982	Strong transcription Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv898357	chr11:105614894-105709856	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:105658000-105689400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
2	chr11:105658200-105693200	Weak transcription	Cortex derived primary cultured neurospheres	brain
3	chr11:105659800-105672600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
4	chr11:105660400-105662600	Enhancers	Brain Substantia Nigra	brain
5	chr11:105661600-105662200	Active TSS	Pancreatic Islets	Pancreatic Islet

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