Variant report

Variant	rs1939101
Chromosome Location	chr11:86579125-86579126
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:86577401..86581075-chr11:86581789..86584675,3	K562	blood:
2	chr11:86577032..86579809-chr11:86748323..86751146,2	K562	blood:

Variant related genes	Relation type
ENSG00000166575	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044081	chr11:86133641-86868560	Bivalent/Poised TSS Weak transcription Active TSS Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
2	nsv541118	chr11:86133641-86868560	Enhancers Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	40 gene(s)	inside rSNPs	diseases
3	esv2756074	chr11:86456552-86729552	Enhancers Weak transcription Active TSS Bivalent Enhancer Strong transcription Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:86537200-86580600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr11:86543200-86582600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
3	chr11:86549600-86581400	Weak transcription	Ovary	ovary
4	chr11:86562600-86585800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
5	chr11:86563200-86598800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
6	chr11:86566800-86585800	Weak transcription	Fetal Muscle Trunk	muscle
7	chr11:86568800-86580600	Weak transcription	Adipose Nuclei	Adipose
8	chr11:86571200-86580600	Weak transcription	Muscle Satellite Cultured Cells	--
9	chr11:86574400-86580800	Weak transcription	NH-A	brain
10	chr11:86575600-86580400	Weak transcription	Fetal Muscle Leg	muscle
11	chr11:86576000-86582400	Weak transcription	Aorta	Aorta
12	chr11:86576400-86580600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
13	chr11:86576600-86580000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr11:86576600-86580400	Weak transcription	HSMM	muscle
15	chr11:86576600-86580400	Weak transcription	HSMMtube	muscle
16	chr11:86576600-86580600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
17	chr11:86576800-86599800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
18	chr11:86577000-86583000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
19	chr11:86577400-86583000	Weak transcription	Stomach Smooth Muscle	stomach
20	chr11:86578200-86593400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr11:86578200-86627400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
22	chr11:86578400-86585400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:86578600-86580400	Weak transcription	NHLF	lung

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