Variant report

Variant	rs1939465
Chromosome Location	chr11:76343336-76343337
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	GATA2	chr11:76342936-76343339	HUVEC	blood vessel:	n/a	n/a
2	POLR2A	chr11:76343134-76343369	HUVEC	blood vessel:	n/a	n/a

Variant related genes	Relation type
ENSG00000255363	TF binding region

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11236816	0.97[ASN][1000 genomes]
rs11236827	0.82[ASN][1000 genomes]
rs11236829	0.82[ASN][1000 genomes]
rs11236831	0.82[ASN][1000 genomes]
rs11236832	0.82[ASN][1000 genomes]
rs12798614	0.82[ASN][1000 genomes]
rs58783758	0.97[ASN][1000 genomes]
rs67649252	0.86[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs73497463	0.97[ASN][1000 genomes]
rs73497464	0.97[ASN][1000 genomes]
rs73497467	0.97[ASN][1000 genomes]
rs7949206	0.94[ASN][1000 genomes]
rs947999	0.97[ASN][1000 genomes]
rs948000	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1043912	chr11:76301316-76439095	Enhancers Flanking Bivalent TSS/Enh Active TSS Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Strong transcription Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
2	nsv1039451	chr11:76301316-76440221	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases
3	esv1810781	chr11:76311021-76464814	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	14 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76340000-76343800	Enhancers	HUVEC	blood vessel
2	chr11:76341600-76346200	Weak transcription	Right Atrium	heart
3	chr11:76341600-76346400	Weak transcription	Lung	lung
4	chr11:76341600-76346400	Weak transcription	Right Ventricle	heart
5	chr11:76341600-76347200	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr11:76341600-76353000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
7	chr11:76341800-76346800	Weak transcription	Spleen	Spleen
8	chr11:76342000-76346000	Weak transcription	Fetal Muscle Trunk	muscle
9	chr11:76342000-76346200	Weak transcription	Colonic Mucosa	Colon
10	chr11:76342000-76346600	Weak transcription	Primary B cells from peripheral blood	blood
11	chr11:76342000-76347000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
12	chr11:76342000-76347400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:76342200-76346200	Weak transcription	Placenta	Placenta
14	chr11:76342200-76346800	Weak transcription	Primary B cells from cord blood	blood
15	chr11:76342400-76348400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr11:76342600-76345200	Weak transcription	Fetal Stomach	stomach
17	chr11:76342600-76346000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
18	chr11:76342600-76346000	Weak transcription	Left Ventricle	heart
19	chr11:76342600-76346000	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr11:76342600-76348000	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr11:76342600-76348000	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr11:76342800-76345200	Weak transcription	Fetal Muscle Leg	muscle
23	chr11:76342800-76346000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
24	chr11:76342800-76347200	Weak transcription	Adipose Nuclei	Adipose
25	chr11:76343000-76343800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links