Variant report

Variant	rs1944612
Chromosome Location	chr11:74862391-74862392
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:2)
CpG islands
(count:0)
Chromatin interactive
region (count:2)
LncRNA
region (count:1)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

(count:2 , 50 per page) page: 1

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	NFIC	chr11:74862329-74862855	ECC-1	luminal epithelium:	n/a	n/a
2	NFIC	chr11:74862367-74862752	HepG2	liver:	n/a	n/a

No data

(count:2 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:74860782..74862620-chr11:74866728..74869676,2	MCF-7	breast:
2	chr11:74860499..74862617-chr11:74862814..74864502,2	K562	blood:

(count:1 , 50 per page) page: 1

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-NEU3-2	chr11:74862124-74862442	NONHSAT023078

No data

Variant related genes	Relation type
SLCO2B1	TF binding region
ENSG00000137491	Chromatin interaction

Extended variants
information (count: 2 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:1)

rs_ID	r²[population]
rs1676880	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv897919	chr11:74862391-74875501	Flanking Active TSS Weak transcription Enhancers Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:48 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:74856600-74863400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr11:74857400-74865600	Weak transcription	Small Intestine	intestine
3	chr11:74859000-74862400	Weak transcription	Liver	Liver
4	chr11:74859000-74863800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr11:74859200-74862400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
6	chr11:74859200-74863200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
7	chr11:74860000-74864000	Weak transcription	Spleen	Spleen
8	chr11:74861000-74862400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr11:74861200-74863600	Enhancers	Gastric	stomach
10	chr11:74861200-74868400	Active TSS	Brain Hippocampus Middle	brain
11	chr11:74861400-74862400	Enhancers	Fetal Stomach	stomach
12	chr11:74861400-74864000	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
13	chr11:74861400-74866000	Active TSS	Brain Anterior Caudate	brain
14	chr11:74861600-74864800	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
15	chr11:74861600-74866200	Active TSS	Brain Dorsolateral Prefrontal Cortex	brain
16	chr11:74861600-74867200	Active TSS	Brain Cingulate Gyrus	brain
17	chr11:74861800-74863200	Enhancers	Fetal Muscle Trunk	muscle
18	chr11:74861800-74864600	Active TSS	Skeletal Muscle Female	skeletal muscle
19	chr11:74861800-74864800	Active TSS	Rectal Smooth Muscle	rectum
20	chr11:74862000-74862400	Active TSS	Fetal Thymus	thymus
21	chr11:74862000-74862600	Flanking Active TSS	Pancreas	Pancrea
22	chr11:74862000-74862600	Flanking Bivalent TSS/Enh	Skeletal Muscle Male	skeletal muscle
23	chr11:74862000-74862800	Active TSS	Duodenum Mucosa	Duodenum
24	chr11:74862000-74862800	Bivalent Enhancer	NHEK	skin
25	chr11:74862000-74863000	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
26	chr11:74862000-74863000	Weak transcription	Sigmoid Colon	Sigmoid Colon
27	chr11:74862000-74864600	Active TSS	Psoas Muscle	Psoas
28	chr11:74862000-74864800	Flanking Active TSS	Fetal Intestine Large	intestine
29	chr11:74862000-74864800	Flanking Active TSS	Fetal Muscle Leg	muscle
30	chr11:74862000-74864800	Flanking Active TSS	HepG2	liver
31	chr11:74862000-74865000	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
32	chr11:74862000-74865200	Active TSS	Adipose Nuclei	Adipose
33	chr11:74862200-74862400	Flanking Active TSS	Colonic Mucosa	Colon
34	chr11:74862200-74862600	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
35	chr11:74862200-74862600	Flanking Active TSS	Left Ventricle	heart
36	chr11:74862200-74862600	Flanking Active TSS	Stomach Mucosa	stomach
37	chr11:74862200-74862800	Active TSS	Right Ventricle	heart
38	chr11:74862200-74863000	Active TSS	Placenta	Placenta
39	chr11:74862200-74863200	Flanking Active TSS	Esophagus	oesophagus
40	chr11:74862200-74864400	Bivalent/Poised TSS	Fetal Adrenal Gland	Adrenal Gland
41	chr11:74862200-74864400	Flanking Active TSS	Fetal Intestine Small	intestine
42	chr11:74862200-74864400	Active TSS	Ovary	ovary
43	chr11:74862200-74864800	Active TSS	Brain Angular Gyrus	brain
44	chr11:74862200-74864800	Active TSS	Brain Inferior Temporal Lobe	brain
45	chr11:74862200-74864800	Active TSS	Duodenum Smooth Muscle	Duodenum
46	chr11:74862200-74864800	Active TSS	Lung	lung
47	chr11:74862200-74865000	Active TSS	Right Atrium	heart
48	chr11:74862200-74866000	Active TSS	Brain Substantia Nigra	brain

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