Variant report

Variant	rs1946105
Chromosome Location	chr12:121057289-121057290
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10744753	0.87[AFR][1000 genomes];0.86[EUR][1000 genomes]
rs12315917	0.84[EUR][1000 genomes]
rs12317100	0.84[EUR][1000 genomes]
rs35434621	0.99[EUR][1000 genomes]
rs4767920	0.86[AFR][1000 genomes];0.88[EUR][1000 genomes]
rs7965013	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521928	chr12:121041728-121761800	Genic enhancers Flanking Active TSS Weak transcription Transcr. at gene 5' and 3' Enhancers Strong transcription ZNF genes & repeats Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	68 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121056000-121057400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr12:121056400-121057400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
3	chr12:121056600-121057600	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
4	chr12:121056600-121058000	Enhancers	H1 Cell Line	embryonic stem cell
5	chr12:121056800-121057400	Bivalent Enhancer	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr12:121056800-121057600	Enhancers	ES-I3 Cell Line	embryonic stem cell
7	chr12:121056800-121057600	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr12:121056800-121057600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
9	chr12:121056800-121057800	Enhancers	H9 Cell Line	embryonic stem cell
10	chr12:121057000-121057400	Bivalent Enhancer	Fetal Brain Male	brain
11	chr12:121057000-121057800	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr12:121057200-121057400	Bivalent Enhancer	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr12:121057200-121057400	Enhancers	iPS-18 Cell Line	embryonic stem cell
14	chr12:121057200-121057400	Enhancers	iPS-20b Cell Line	embryonic stem cell
15	chr12:121057200-121057400	Bivalent Enhancer	Cortex derived primary cultured neurospheres	brain
16	chr12:121057200-121057600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
17	chr12:121057200-121057600	Enhancers	iPS-15b Cell Line	embryonic stem cell

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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