Variant report

Variant	rs1946854
Chromosome Location	chr18:10175473-10175474
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 66 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:64)

rs_ID	r²[population]
rs10238001	0.90[ASN][1000 genomes]
rs10238781	0.89[ASN][1000 genomes]
rs10250989	0.90[ASN][1000 genomes]
rs10257979	0.92[ASN][1000 genomes]
rs10282465	0.92[ASN][1000 genomes]
rs1036611	0.90[ASN][1000 genomes]
rs10807673	0.92[ASN][1000 genomes]
rs10807674	0.92[ASN][1000 genomes]
rs10949858	0.83[AFR][1000 genomes];0.94[EUR][1000 genomes]
rs10949863	0.80[AMR][1000 genomes];0.89[ASN][1000 genomes]
rs10949865	0.92[ASN][1000 genomes]
rs10949866	0.92[ASN][1000 genomes]
rs11520659	0.86[EUR][1000 genomes]
rs11979814	0.92[ASN][1000 genomes]
rs12668280	0.90[ASN][1000 genomes]
rs13227194	0.84[ASN][1000 genomes]
rs1347879	0.92[ASN][1000 genomes]
rs1439144	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1439145	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.88[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1439147	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1583720	0.87[EUR][1000 genomes]
rs1595623	0.85[EUR][1000 genomes]
rs1807031	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1814044	0.89[ASN][1000 genomes]
rs1837332	0.89[EUR][1000 genomes]
rs1837333	0.85[AFR][1000 genomes];0.97[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1837334	0.91[EUR][1000 genomes]
rs1837345	0.85[EUR][1000 genomes]
rs1898827	0.91[ASN][1000 genomes]
rs2011824	0.92[ASN][1000 genomes]
rs2017683	0.83[EUR][1000 genomes]
rs2018295	0.89[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2018367	0.93[EUR][1000 genomes]
rs2278571	0.89[EUR][1000 genomes]
rs2278573	0.90[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2278574	0.86[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs2861498	0.86[EUR][1000 genomes]
rs2861499	0.81[EUR][1000 genomes]
rs2861504	0.85[ASN][1000 genomes]
rs3857669	0.87[EUR][1000 genomes]
rs4467830	0.82[ASN][1000 genomes]
rs4717163	0.87[AFR][1000 genomes];0.97[AMR][1000 genomes];0.90[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4717966	0.90[ASN][1000 genomes]
rs4717967	0.94[ASN][1000 genomes]
rs4717969	0.94[ASN][1000 genomes]
rs56303175	0.85[EUR][1000 genomes]
rs6460105	0.94[ASN][1000 genomes]
rs6460106	0.92[ASN][1000 genomes]
rs6460107	0.92[ASN][1000 genomes]
rs6460109	0.84[EUR][1000 genomes]
rs6949981	0.92[ASN][1000 genomes]
rs6959038	0.92[ASN][1000 genomes]
rs6959359	0.94[ASN][1000 genomes]
rs6960046	0.86[EUR][1000 genomes]
rs6973547	0.92[ASN][1000 genomes]
rs6973557	0.94[ASN][1000 genomes]
rs6973779	0.91[ASN][1000 genomes]
rs6979758	0.92[ASN][1000 genomes]
rs7779829	0.92[ASN][1000 genomes]
rs7783518	0.92[ASN][1000 genomes]
rs7793587	0.92[ASN][1000 genomes]
rs7810753	0.92[ASN][1000 genomes]
rs970354	0.85[EUR][1000 genomes]
rs981084	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv909368	chr18:10142323-10272979	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers	Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv1059110	chr18:10142983-10596012	Enhancers Weak transcription Strong transcription Bivalent Enhancer Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr18:10169600-10182000	Weak transcription	Esophagus	oesophagus
2	chr18:10174800-10175800	Enhancers	Primary monocytes fromperipheralblood	blood
3	chr18:10175400-10176200	Enhancers	Primary B cells from peripheral blood	blood

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