The 2.0 version of rSNPBase

Variant report

Variant rs1947178
Chromosome Location chr8:59872177-59872178
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:47 , 50 per page) page: 1
No. Chromosome Location Chromatin state Cell line Tissue
1 chr8:59851400-59878600 Weak transcription Aorta Aorta
2 chr8:59852000-59875200 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Female --
3 chr8:59852000-59883400 Weak transcription Primary T regulatory cells fromperipheralblood blood
4 chr8:59852200-59874200 Weak transcription Primary Natural Killer cells fromperipheralblood blood
5 chr8:59852400-59875000 Weak transcription Primary hematopoietic stem cells G-CSF-mobilized Male --
6 chr8:59852400-59875600 Weak transcription Primary hematopoietic stem cells short term culture blood
7 chr8:59852600-59888600 Weak transcription Primary hematopoietic stem cells blood
8 chr8:59858200-59872600 Weak transcription Fetal Kidney kidney
9 chr8:59867200-59878600 Weak transcription Cortex derived primary cultured neurospheres brain
10 chr8:59868000-59875200 Weak transcription Thymus Thymus
11 chr8:59868000-59880000 Weak transcription Sigmoid Colon Sigmoid Colon
12 chr8:59868200-59881200 Weak transcription Primary T cells from cord blood blood
13 chr8:59869200-59872800 Strong transcription Fetal Thymus thymus
14 chr8:59869400-59872400 Enhancers Fetal Brain Male brain
15 chr8:59869400-59874000 Enhancers NHDF-Ad bronchial
16 chr8:59869800-59873800 Enhancers Fetal Lung lung
17 chr8:59869800-59876800 Weak transcription Gastric stomach
18 chr8:59870200-59886600 Weak transcription IMR90 fetal lung fibroblasts Cell Line lung
19 chr8:59870400-59873800 Enhancers Brain Germinal Matrix brain
20 chr8:59870600-59872600 Enhancers H9 Derived Neuron Cultured Cells ES cell derived
21 chr8:59870800-59872200 Enhancers H9 Derived Neuronal Progenitor Cultured Cells ES cell derived
22 chr8:59870800-59872800 Enhancers Fetal Stomach stomach
23 chr8:59871000-59872600 Enhancers Ganglion Eminence derived primary cultured neurospheres brain
24 chr8:59871200-59872400 Enhancers Duodenum Smooth Muscle Duodenum
25 chr8:59871200-59872400 Enhancers Rectal Smooth Muscle rectum
26 chr8:59871200-59872800 Active TSS Pancreatic Islets Pancreatic Islet
27 chr8:59871200-59872800 Enhancers Stomach Mucosa stomach
28 chr8:59871200-59873600 Enhancers iPS-15b Cell Line embryonic stem cell
29 chr8:59871400-59877200 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
30 chr8:59871600-59872400 Weak transcription Osteobl bone
31 chr8:59871600-59873200 Weak transcription Fetal Heart heart
32 chr8:59871600-59875000 Weak transcription Dnd41 blood
33 chr8:59871600-59878000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
34 chr8:59871600-59878000 Weak transcription HSMM muscle
35 chr8:59871800-59872200 Enhancers iPS-18 Cell Line embryonic stem cell
36 chr8:59871800-59872400 Enhancers iPS-20b Cell Line embryonic stem cell
37 chr8:59871800-59872400 Enhancers Colon Smooth Muscle Colon
38 chr8:59871800-59872800 Enhancers Pancreas Pancrea
39 chr8:59871800-59872800 Enhancers Stomach Smooth Muscle stomach
40 chr8:59871800-59878600 Weak transcription Foreskin Fibroblast Primary Cells skin01 Skin
41 chr8:59871800-59878600 Weak transcription NHLF lung
42 chr8:59872000-59872200 Enhancers Duodenum Mucosa Duodenum
43 chr8:59872000-59872600 Enhancers H1 BMP4 Derived Mesendoderm Cultured Cells ES cell derived
44 chr8:59872000-59872600 Enhancers hESC Derived CD184+ Endoderm Cultured Cells ES cell derived
45 chr8:59872000-59872600 Enhancers Fetal Brain Female brain
46 chr8:59872000-59872800 Enhancers Small Intestine intestine
47 chr8:59872000-59873000 Enhancers HUES48 Cell Line embryonic stem cell

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Last update: Aug 31, 2015