Variant report

Variant	rs1947485
Chromosome Location	chr11:106913252-106913253
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1585049	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1840568	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv531938	chr11:106760733-107156814	Enhancers Bivalent/Poised TSS Active TSS ZNF genes & repeats Weak transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	nsv527555	chr11:106895032-106971481	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:106912000-106913400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
2	chr11:106912000-106913400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr11:106912000-106913400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
4	chr11:106912000-106913400	Weak transcription	Brain Hippocampus Middle	brain
5	chr11:106912000-106913400	Weak transcription	Brain Substantia Nigra	brain
6	chr11:106912000-106913600	Weak transcription	HMEC	breast
7	chr11:106912200-106913400	Weak transcription	GM12878-XiMat	blood
8	chr11:106912400-106913400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
9	chr11:106912400-106913600	Weak transcription	Muscle Satellite Cultured Cells	--
10	chr11:106912600-106913400	Weak transcription	HSMM	muscle
11	chr11:106913200-106914000	Enhancers	NH-A	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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