Variant report

Variant	rs194757
Chromosome Location	chr14:69213851-69213852
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:8)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:8 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:69212433..69215414-chr14:69260940..69263889,2	MCF-7	breast:
2	chr14:69213485..69215775-chr14:69249988..69251772,2	K562	blood:
3	chr14:69210895..69217826-chr14:69255953..69264501,15	K562	blood:
4	chr14:69196700..69198365-chr14:69213161..69215430,2	K562	blood:
5	chr14:69212479..69217981-chr14:69255953..69262357,9	K562	blood:
6	chr14:69206368..69210602-chr14:69212379..69216516,4	K562	blood:
7	chr14:69206574..69210602-chr14:69211879..69218026,8	K562	blood:
8	chr14:69183888..69188009-chr14:69213725..69217312,4	K562	blood:

No data

Variant related genes	Relation type
ENSG00000185650	Chromatin interaction

Extended variants
information (count: 3 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:3)

rs_ID	r²[population]
rs168963	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs194756	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs52701	0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:69198400-69214000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:69201200-69222600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr14:69202800-69224600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
4	chr14:69204200-69219200	Weak transcription	Adipose Nuclei	Adipose
5	chr14:69205600-69214200	Weak transcription	Spleen	Spleen
6	chr14:69205600-69216200	Weak transcription	Lung	lung
7	chr14:69212600-69215400	Weak transcription	Right Ventricle	heart
8	chr14:69212600-69229200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
9	chr14:69213800-69214000	Enhancers	Left Ventricle	heart
10	chr14:69213800-69214000	Enhancers	Pancreas	Pancrea
11	chr14:69213800-69214400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr14:69213800-69214400	Enhancers	Rectal Smooth Muscle	rectum
13	chr14:69213800-69214400	Enhancers	Right Atrium	heart
14	chr14:69213800-69214600	Enhancers	Fetal Muscle Trunk	muscle
15	chr14:69213800-69214800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr14:69213800-69214800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr14:69213800-69215600	Enhancers	Breast Myoepithelial Primary Cells	Breast
18	chr14:69213800-69216600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
19	chr14:69213800-69216800	Enhancers	Placenta Amnion	Placenta Amnion
20	chr14:69213800-69217000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
21	chr14:69213800-69217000	Enhancers	Fetal Muscle Leg	muscle
22	chr14:69213800-69217000	Enhancers	Placenta	Placenta
23	chr14:69213800-69217200	Enhancers	Esophagus	oesophagus
24	chr14:69213800-69217200	Enhancers	Fetal Heart	heart
25	chr14:69213800-69217400	Enhancers	HepG2	liver
26	chr14:69213800-69217400	Enhancers	K562	blood
27	chr14:69213800-69217800	Enhancers	Colon Smooth Muscle	Colon

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links