Variant report

Variant	rs194876
Chromosome Location	chr6:82406730-82406731
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 2 )

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1145870	0.97[AFR][1000 genomes];0.94[AMR][1000 genomes];0.87[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs194878	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs194876	KIAA1009	cis	cerebellum	SCAN
rs194876	TBX18	cis	cerebellum	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:82405000-82407400	Enhancers	iPS-15b Cell Line	embryonic stem cell
2	chr6:82405400-82407800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:82405600-82407400	Enhancers	iPS-18 Cell Line	embryonic stem cell
4	chr6:82405600-82407600	Enhancers	ES-I3 Cell Line	embryonic stem cell
5	chr6:82405600-82407600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr6:82405800-82406800	Enhancers	HUES64 Cell Line	embryonic stem cell
7	chr6:82406000-82407600	Enhancers	Skeletal Muscle Female	skeletal muscle
8	chr6:82406200-82407200	Enhancers	Liver	Liver
9	chr6:82406200-82407200	Weak transcription	Stomach Smooth Muscle	stomach
10	chr6:82406200-82407400	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr6:82406200-82407400	Enhancers	Fetal Heart	heart
12	chr6:82406200-82407400	Enhancers	Psoas Muscle	Psoas
13	chr6:82406200-82407400	Enhancers	HepG2	liver
14	chr6:82406200-82407600	Enhancers	Colon Smooth Muscle	Colon
15	chr6:82406200-82407800	Enhancers	Rectal Smooth Muscle	rectum
16	chr6:82406200-82407800	Enhancers	HSMM	muscle
17	chr6:82406400-82406800	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
18	chr6:82406400-82407200	Weak transcription	Placenta	Placenta
19	chr6:82406400-82407400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
20	chr6:82406400-82407400	Weak transcription	H9 Cell Line	embryonic stem cell
21	chr6:82406400-82407400	Enhancers	Pancreatic Islets	Pancreatic Islet
22	chr6:82406400-82407600	Enhancers	Fetal Stomach	stomach
23	chr6:82406600-82407400	Weak transcription	H1 Cell Line	embryonic stem cell
24	chr6:82406600-82407600	Enhancers	HUES48 Cell Line	embryonic stem cell
25	chr6:82406600-82407600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr6:82406600-82408400	Enhancers	Hela-S3	cervix

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