Variant report

Variant	rs1948916
Chromosome Location	chr3:161318668-161318669
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs2135444	1.00[ASN][1000 genomes]
rs2135445	1.00[ASN][1000 genomes]
rs2135446	1.00[ASN][1000 genomes]
rs2135447	1.00[ASN][1000 genomes]
rs61535864	1.00[ASN][1000 genomes]
rs61710096	1.00[ASN][1000 genomes]
rs6787329	1.00[ASN][1000 genomes]
rs6798679	1.00[ASN][1000 genomes]
rs73875671	1.00[ASN][1000 genomes]
rs73875672	1.00[ASN][1000 genomes]
rs73875677	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs73875679	1.00[ASN][1000 genomes]
rs73875680	1.00[ASN][1000 genomes]
rs73875682	1.00[ASN][1000 genomes]
rs73875699	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533237	chr3:161019834-161804660	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	91 gene(s)	inside rSNPs	diseases
2	nsv829774	chr3:161229405-161386919	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	esv2422309	chr3:161242389-161425932	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
4	nsv877711	chr3:161275848-161486665	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:161316800-161319400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
2	chr3:161316800-161319600	Weak transcription	HUES6 Cell Line	embryonic stem cell
3	chr3:161318000-161318800	Active TSS	A549	lung
4	chr3:161318200-161318800	Enhancers	Gastric	stomach

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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