Variant report

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:34828929..34832909-chr11:34833620..34837580,5	K562	blood:

rSNPs within LD-proxies of this variant (count:21)

rs_ID	r²[population]
rs10501136	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs10836315	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11602870	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11602886	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11605381	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12272777	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12278295	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12291580	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12293044	0.80[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12803664	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs12808574	0.81[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1949048	0.86[AMR][1000 genomes];0.85[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs34026463	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34191151	0.80[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34878924	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35833762	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs35953213	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61881103	0.83[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61881104	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs61881107	0.81[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7131074	0.85[AMR][1000 genomes];0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832118	chr11:34743123-34903951	Weak transcription Enhancers Bivalent Enhancer ZNF genes & repeats Strong transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv832119	chr11:34815528-35009370	Strong transcription Enhancers Active TSS Weak transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:34832400-34846000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr11:34836800-34838600	Weak transcription	Breast Myoepithelial Primary Cells	Breast

Quick Search: