Variant report

Variant	rs1951375
Chromosome Location	chr14:36520775-36520776
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs107196	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs12431566	0.96[AFR][1000 genomes];0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1742867	0.85[CEU][hapmap]
rs1742868	0.82[CEU][hapmap]
rs1742869	0.82[CEU][hapmap]
rs1759760	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1957313	0.84[CEU][hapmap]
rs1957314	0.84[CEU][hapmap]
rs2755193	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2780308	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2780309	0.88[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2780310	0.91[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2780312	0.84[CEU][hapmap]
rs2780314	0.80[CEU][hapmap]
rs368181	0.82[CEU][hapmap]
rs394246	0.82[CEU][hapmap]
rs395212	0.85[CEU][hapmap]
rs398745	0.82[CEU][hapmap]
rs414155	0.82[EUR][1000 genomes]
rs416664	0.81[EUR][1000 genomes]
rs429041	0.82[CEU][hapmap]
rs448145	0.85[CEU][hapmap]
rs6571735	0.85[CEU][hapmap]
rs7147401	0.82[CEU][hapmap]
rs860200	1.00[CEU][hapmap];0.93[GIH][hapmap];0.98[TSI][hapmap];0.82[AMR][1000 genomes];0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1051045	chr14:36116503-36764947	Weak transcription Strong transcription Enhancers ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
2	nsv542038	chr14:36116503-36764947	Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	60 gene(s)	inside rSNPs	diseases
3	nsv1051147	chr14:36413342-36562863	Enhancers Weak transcription Active TSS Bivalent Enhancer ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
4	nsv1040256	chr14:36501452-37172046	Strong transcription Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Active TSS Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases
5	nsv542040	chr14:36501452-37172046	Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	45 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:36518400-36523200	Weak transcription	Brain Anterior Caudate	brain

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links