Variant report

Variant	rs1951798
Chromosome Location	chr14:25417598-25417599
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs17257591	0.92[CHB][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17257605	1.00[CHB][hapmap];0.89[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs57756913	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57929289	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:10 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1041336	chr14:24726564-25527319	Weak transcription Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Enhancers Active TSS Strong transcription Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
2	nsv542000	chr14:24726564-25527319	Genic enhancers Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Strong transcription Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	107 gene(s)	inside rSNPs	diseases
3	nsv901504	chr14:25184210-25646203	Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
4	nsv901508	chr14:25365505-25451903	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Genic enhancers Active TSS ZNF genes & repeats Strong transcription Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
5	nsv1041051	chr14:25388230-25480511	Enhancers Flanking Active TSS Weak transcription Strong transcription Genic enhancers Bivalent Enhancer Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv1047792	chr14:25388933-25503799	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Strong transcription Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv901509	chr14:25398571-25743484	Weak transcription Enhancers Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Flanking Active TSS Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
8	nsv983765	chr14:25417522-25423084	Weak transcription Enhancers Flanking Active TSS Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
9	esv3302435	chr14:25417550-25418063	Enhancers Weak transcription	n/a	n/a	inside rSNPs	diseases
10	esv3302436	chr14:25417550-25418063	Weak transcription Enhancers	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:25412000-25417600	Weak transcription	HepG2	liver
2	chr14:25412400-25417600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:25412600-25417600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
4	chr14:25412600-25422200	Weak transcription	Fetal Lung	lung
5	chr14:25412600-25422200	Weak transcription	Lung	lung
6	chr14:25412600-25422400	Weak transcription	Right Ventricle	heart
7	chr14:25412600-25423600	Weak transcription	Right Atrium	heart
8	chr14:25412600-25426600	Weak transcription	Fetal Intestine Small	intestine
9	chr14:25412600-25426800	Weak transcription	Fetal Intestine Large	intestine
10	chr14:25412800-25417600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr14:25413000-25417600	Weak transcription	HUES64 Cell Line	embryonic stem cell
12	chr14:25413600-25422200	Weak transcription	H1 Cell Line	embryonic stem cell
13	chr14:25413800-25422200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr14:25414200-25417600	Weak transcription	HUES6 Cell Line	embryonic stem cell
15	chr14:25414200-25419000	Weak transcription	H9 Cell Line	embryonic stem cell
16	chr14:25414200-25422200	Weak transcription	Brain Angular Gyrus	brain
17	chr14:25414200-25422400	Weak transcription	Stomach Smooth Muscle	stomach
18	chr14:25414200-25424400	Weak transcription	Pancreas	Pancrea
19	chr14:25414800-25421800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr14:25416600-25422200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr14:25416800-25421600	Weak transcription	Brain Cingulate Gyrus	brain
22	chr14:25416800-25422000	Weak transcription	Brain Anterior Caudate	brain
23	chr14:25417200-25417800	Enhancers	Left Ventricle	heart
24	chr14:25417200-25419200	Enhancers	iPS-15b Cell Line	embryonic stem cell
25	chr14:25417400-25417800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
26	chr14:25417400-25418000	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
27	chr14:25417400-25418200	Enhancers	HUES48 Cell Line	embryonic stem cell
28	chr14:25417400-25418200	Enhancers	iPS-18 Cell Line	embryonic stem cell
29	chr14:25417400-25418200	Enhancers	iPS-20b Cell Line	embryonic stem cell

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