Variant report

Variant	rs1951885
Chromosome Location	chr14:42341539-42341540
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:15)

rs_ID	r²[population]
rs10142438	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs10142615	0.83[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11848944	0.82[ASN][1000 genomes]
rs17112380	0.82[ASN][1000 genomes]
rs1957869	0.82[ASN][1000 genomes]
rs2147112	0.88[ASN][1000 genomes]
rs2181736	0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs2224838	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4904978	0.81[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs6572117	0.80[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs721222	0.83[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs8020905	0.81[ASN][1000 genomes]
rs988740	0.81[ASN][1000 genomes]
rs988741	0.82[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs988805	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1047300	chr14:41671653-42361098	Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS Weak transcription Bivalent Enhancer ZNF genes & repeats Strong transcription Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:42338200-42342200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr14:42340200-42341600	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
3	chr14:42341400-42343600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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