Variant report

Variant	rs1952131
Chromosome Location	chr10:25403234-25403235
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 2 )
Associated
traits (count: 2 )

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv894970	chr10:25385858-25522280	Enhancers Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Weak transcription Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv894971	chr10:25403234-25522280	Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

mRNA abundance (count:2)

SNP	Gene	Cis/trans	Tissue	Source
rs1952131	NEBL	cis	cerebellum	SCAN
rs1952131	MYO3A	cis	parietal	SCAN

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:25392400-25414200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr10:25395000-25405000	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr10:25397400-25404800	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr10:25398200-25404600	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr10:25400400-25403400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr10:25401800-25403400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr10:25401800-25403400	Enhancers	Rectal Mucosa Donor 31	rectum
8	chr10:25402000-25403400	Enhancers	Stomach Mucosa	stomach
9	chr10:25402000-25403400	Enhancers	HMEC	breast
10	chr10:25402200-25403600	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
11	chr10:25402600-25403400	Enhancers	Breast Myoepithelial Primary Cells	Breast
12	chr10:25402600-25403400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
13	chr10:25402600-25403400	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr10:25402600-25403600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr10:25402600-25404600	Weak transcription	HUES6 Cell Line	embryonic stem cell
16	chr10:25402600-25404600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
17	chr10:25402600-25409600	Weak transcription	Pancreas	Pancrea
18	chr10:25402800-25404800	Weak transcription	iPS-18 Cell Line	embryonic stem cell
19	chr10:25402800-25405400	Weak transcription	HUES48 Cell Line	embryonic stem cell
20	chr10:25403000-25403400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr10:25403000-25403400	Enhancers	Cortex derived primary cultured neurospheres	brain
22	chr10:25403000-25403600	Enhancers	Brain Substantia Nigra	brain
23	chr10:25403000-25404800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
24	chr10:25403200-25404800	Weak transcription	A549	lung
25	chr10:25403200-25405800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr10:25403200-25406400	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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