Variant report

Variant	rs1953059
Chromosome Location	chr10:56186076-56186077
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10825318	0.81[ASN][1000 genomes]
rs10825324	0.90[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11004303	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11597868	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11598050	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11599664	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12781673	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs12782473	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs1888973	0.85[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs34848756	0.85[ASN][1000 genomes]
rs34876753	0.81[ASN][1000 genomes]
rs66677889	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs67040242	0.90[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs981497	0.87[AMR][1000 genomes];0.87[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054364	chr10:55925471-56196447	ZNF genes & repeats Enhancers Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
2	nsv540633	chr10:55925471-56196447	Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
3	nsv1044020	chr10:56038546-56224736	Enhancers ZNF genes & repeats Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
4	nsv540634	chr10:56038546-56224736	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
5	nsv831879	chr10:56059973-56210729	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region Chromatin interactive region	1 gene(s)	inside rSNPs	diseases
6	nsv1052386	chr10:56075990-56273476	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:56186000-56186200	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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