Variant report

Variant	rs1953614
Chromosome Location	chr6:69686848-69686849
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:17)

rs_ID	r²[population]
rs12665384	0.95[AMR][1000 genomes];0.87[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs12665411	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1336654	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs1415032	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1572940	0.81[EUR][1000 genomes]
rs3757049	0.81[EUR][1000 genomes]
rs3798971	0.85[ASN][1000 genomes]
rs3798982	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3798983	0.95[AMR][1000 genomes];0.88[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3798990	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3798995	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs3798997	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs3799019	0.81[EUR][1000 genomes]
rs72906776	0.98[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9360369	0.93[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs960991	0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs9718113	0.88[AMR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv5338	chr6:69670701-69701360	Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	esv3368681	chr6:69682552-69687715	Enhancers Strong transcription Weak transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv603620	chr6:69684850-69691596	Weak transcription Enhancers Strong transcription	Chromatin interactive region	n/a	inside rSNPs	diseases
4	nsv886137	chr6:69684850-70095690	Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:13 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:69685000-69700000	Weak transcription	Brain Angular Gyrus	brain
2	chr6:69685400-69700400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
3	chr6:69685800-69687200	Weak transcription	Brain Germinal Matrix	brain
4	chr6:69685800-69758800	Weak transcription	Fetal Brain Male	brain
5	chr6:69686000-69695400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr6:69686000-69700000	Weak transcription	Brain Hippocampus Middle	brain
7	chr6:69686000-69700400	Weak transcription	Brain Anterior Caudate	brain
8	chr6:69686000-69700600	Weak transcription	Brain Inferior Temporal Lobe	brain
9	chr6:69686200-69687600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
10	chr6:69686200-69695200	Weak transcription	Brain Cingulate Gyrus	brain
11	chr6:69686200-69703400	Weak transcription	Cortex derived primary cultured neurospheres	brain
12	chr6:69686600-69700200	Weak transcription	Brain Substantia Nigra	brain
13	chr6:69686800-69706200	Weak transcription	Fetal Lung	lung

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dbSNP/dbVar ID: rs12345 /nsv7879
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chromosomal regions: chr1:12345-34567

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