Variant report

Variant	rs1955356
Chromosome Location	chr10:43710074-43710075
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr10:43709038..43711304-chr10:43890579..43893237,2	K562	blood:

Variant related genes	Relation type
ENSG00000169813	Chromatin interaction

Extended variants
information (count: 34 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs1059483	0.86[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs1254964	0.86[CEU][hapmap];1.00[CHB][hapmap];0.87[EUR][1000 genomes]
rs12769745	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1879300	1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs1879309	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.91[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2090745	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2460542	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2460544	0.96[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2460550	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2460552	0.82[AFR][1000 genomes];0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2460555	0.82[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2503844	0.81[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs2503846	0.83[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2503851	0.92[AFR][1000 genomes];0.91[AMR][1000 genomes];0.89[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2503854	1.00[JPT][hapmap];0.84[EUR][1000 genomes]
rs2503856	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs2505504	0.84[EUR][1000 genomes]
rs2505510	1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs2505524	1.00[CHB][hapmap];1.00[JPT][hapmap];0.84[AMR][1000 genomes];0.86[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs4948704	0.86[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs4948706	0.91[CEU][hapmap];1.00[CHB][hapmap];0.85[EUR][1000 genomes]
rs7476512	0.86[CEU][hapmap];1.00[CHB][hapmap];0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:12 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv534548	chr10:42890664-43729688	Weak transcription Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv430159	chr10:43291894-43946294	Flanking Active TSS Enhancers Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	92 gene(s)	inside rSNPs	diseases
3	nsv895082	chr10:43530071-43755506	Strong transcription ZNF genes & repeats Enhancers Genic enhancers Flanking Active TSS Weak transcription Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases
4	nsv895083	chr10:43549708-43765485	Weak transcription Strong transcription Active TSS Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	13 gene(s)	inside rSNPs	diseases
5	nsv916378	chr10:43622151-43868356	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	16 gene(s)	inside rSNPs	diseases
6	nsv1043661	chr10:43626619-43890162	Bivalent Enhancer Active TSS Enhancers Weak transcription Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
7	nsv540574	chr10:43626619-43890162	Enhancers Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	17 gene(s)	inside rSNPs	diseases
8	esv1831010	chr10:43674916-43759185	Active TSS Weak transcription Bivalent Enhancer Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	4 gene(s)	inside rSNPs	diseases
9	nsv895084	chr10:43688505-43765485	Weak transcription Enhancers Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
10	nsv466881	chr10:43695049-43799588	Bivalent/Poised TSS Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Strong transcription Flanking Bivalent TSS/Enh Weak transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
11	nsv550696	chr10:43695049-43799588	Weak transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
12	nsv895085	chr10:43695049-43804617	Enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:36 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:43698000-43722800	Weak transcription	Gastric	stomach
2	chr10:43698400-43710800	Weak transcription	Esophagus	oesophagus
3	chr10:43699400-43716800	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
4	chr10:43699400-43724600	Weak transcription	Right Atrium	heart
5	chr10:43706800-43711600	Weak transcription	Spleen	Spleen
6	chr10:43707800-43710200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr10:43708200-43713600	Weak transcription	Brain Substantia Nigra	brain
8	chr10:43708400-43710200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
9	chr10:43708400-43716400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr10:43709000-43710400	Enhancers	Brain Germinal Matrix	brain
11	chr10:43709400-43710400	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
12	chr10:43709400-43711600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr10:43709600-43710200	Enhancers	Fetal Brain Female	brain
14	chr10:43709600-43711400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
15	chr10:43709600-43712000	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
16	chr10:43709600-43712200	Enhancers	Brain Inferior Temporal Lobe	brain
17	chr10:43709600-43714800	Enhancers	Fetal Brain Male	brain
18	chr10:43709800-43710200	Bivalent Enhancer	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr10:43709800-43710800	Enhancers	Brain Hippocampus Middle	brain
20	chr10:43709800-43710800	Enhancers	NH-A	brain
21	chr10:43709800-43711200	Bivalent Enhancer	Fetal Muscle Trunk	muscle
22	chr10:43709800-43711400	Enhancers	Brain Angular Gyrus	brain
23	chr10:43709800-43711800	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr10:43709800-43712000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
25	chr10:43709800-43712000	Enhancers	Fetal Heart	heart
26	chr10:43709800-43712200	Enhancers	Brain Cingulate Gyrus	brain
27	chr10:43710000-43710200	Bivalent Enhancer	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr10:43710000-43710200	Flanking Bivalent TSS/Enh	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr10:43710000-43710200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr10:43710000-43710200	Bivalent Enhancer	Foreskin Keratinocyte Primary Cells skin03	Skin
31	chr10:43710000-43710400	Bivalent Enhancer	Fetal Adrenal Gland	Adrenal Gland
32	chr10:43710000-43710600	Enhancers	A549	lung
33	chr10:43710000-43710800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
34	chr10:43710000-43710800	Enhancers	HUES6 Cell Line	embryonic stem cell
35	chr10:43710000-43712200	Enhancers	Cortex derived primary cultured neurospheres	brain
36	chr10:43710000-43713000	Enhancers	Brain Anterior Caudate	brain

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