Variant report

Variant	rs1955681
Chromosome Location	chr14:63699771-63699772
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs10138980	0.92[EUR][1000 genomes]
rs10139434	0.88[EUR][1000 genomes]
rs10148219	0.93[CEU][hapmap];0.91[EUR][1000 genomes]
rs10162301	0.81[CEU][hapmap];0.80[TSI][hapmap];0.84[EUR][1000 genomes]
rs10483767	1.00[CEU][hapmap];0.84[TSI][hapmap];0.93[EUR][1000 genomes]
rs17100876	0.88[ASW][hapmap];0.89[LWK][hapmap];0.88[MKK][hapmap];0.81[YRI][hapmap];0.88[AFR][1000 genomes]
rs17224456	0.82[ASW][hapmap];1.00[CEU][hapmap];0.94[GIH][hapmap];0.81[JPT][hapmap];0.95[TSI][hapmap];0.92[YRI][hapmap];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs1955670	0.93[CEU][hapmap];0.92[EUR][1000 genomes]
rs1957785	0.81[CEU][hapmap]
rs57673534	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs8013013	0.93[CEU][hapmap];0.84[TSI][hapmap];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv527251	chr14:63400786-64068806	Flanking Bivalent TSS/Enh Weak transcription Strong transcription Flanking Active TSS Enhancers Active TSS ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv520528	chr14:63400786-64157117	Weak transcription Enhancers Flanking Active TSS Genic enhancers ZNF genes & repeats Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	49 gene(s)	inside rSNPs	diseases
3	nsv564893	chr14:63526931-63796122	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
4	nsv1045599	chr14:63540073-63765152	Active TSS Enhancers Weak transcription Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv530774	chr14:63591348-64029881	Active TSS Strong transcription Weak transcription Enhancers Flanking Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
6	nsv915909	chr14:63620440-64560369	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	67 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:63672000-63717000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
2	chr14:63676200-63707600	Weak transcription	Aorta	Aorta
3	chr14:63676400-63733600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
4	chr14:63679400-63717000	Weak transcription	Fetal Muscle Trunk	muscle
5	chr14:63691200-63716800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr14:63691400-63712800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr14:63691600-63705800	Weak transcription	Fetal Stomach	stomach
8	chr14:63691600-63712400	Weak transcription	Ovary	ovary
9	chr14:63696600-63707600	Weak transcription	Breast Myoepithelial Primary Cells	Breast
10	chr14:63696800-63707200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr14:63697000-63704800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:63697000-63712600	Weak transcription	NH-A	brain
13	chr14:63697400-63712400	Weak transcription	Fetal Muscle Leg	muscle
14	chr14:63698400-63702200	Enhancers	Cortex derived primary cultured neurospheres	brain
15	chr14:63698800-63701400	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
16	chr14:63699400-63699800	Weak transcription	HUVEC	blood vessel
17	chr14:63699600-63700200	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
18	chr14:63699600-63700600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr14:63699600-63700800	Enhancers	Right Atrium	heart
20	chr14:63699600-63707800	Weak transcription	Left Ventricle	heart
21	chr14:63699600-63716600	Weak transcription	Fetal Lung	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links