Variant report

Variant	rs1955885
Chromosome Location	chr14:26021502-26021503
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs1950447	0.81[AFR][1000 genomes]
rs1950448	0.81[AFR][1000 genomes]
rs1950449	0.96[ASN][1000 genomes]
rs1955880	0.81[AFR][1000 genomes]
rs1955882	0.81[AFR][1000 genomes]
rs8011455	0.90[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs8013460	0.89[AFR][1000 genomes];0.96[ASN][1000 genomes]
rs8018144	0.81[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832750	chr14:25856828-26022092	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
2	nsv901519	chr14:25949277-26043929	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
3	nsv430993	chr14:25976760-26097160	Active TSS Enhancers ZNF genes & repeats Weak transcription Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:26020400-26022000	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr14:26020600-26021800	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr14:26020800-26025800	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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