Variant report

Variant	rs1956210
Chromosome Location	chr14:33042208-33042209
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:33040924..33044247-chr14:33045114..33047639,3	MCF-7	breast:

Extended variants
information (count: 4 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs1956214	0.82[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]
rs733978	0.82[CHD][hapmap];1.00[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1045035	chr14:32986003-33543227	Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Flanking Active TSS Bivalent/Poised TSS Active TSS Bivalent Enhancer Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
2	nsv542021	chr14:32986003-33543227	Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Strong transcription Genic enhancers Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:33034400-33058200	Weak transcription	Psoas Muscle	Psoas
2	chr14:33035000-33045600	Weak transcription	Fetal Muscle Leg	muscle
3	chr14:33035000-33045600	Weak transcription	HSMMtube	muscle
4	chr14:33035400-33062600	Weak transcription	Aorta	Aorta
5	chr14:33037000-33045600	Weak transcription	Brain Angular Gyrus	brain
6	chr14:33037600-33045600	Weak transcription	Brain Anterior Caudate	brain
7	chr14:33041000-33042400	Enhancers	Colon Smooth Muscle	Colon
8	chr14:33041000-33045800	Weak transcription	Brain Germinal Matrix	brain
9	chr14:33041200-33042400	Active TSS	Rectal Mucosa Donor 29	rectum
10	chr14:33041200-33042400	Enhancers	Rectal Mucosa Donor 31	rectum
11	chr14:33041200-33042400	Enhancers	Stomach Smooth Muscle	stomach
12	chr14:33041200-33042400	Enhancers	HepG2	liver
13	chr14:33041400-33042400	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr14:33041600-33042400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
15	chr14:33041600-33042400	Enhancers	Brain Hippocampus Middle	brain
16	chr14:33041600-33042600	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr14:33041600-33042600	Enhancers	HUES64 Cell Line	embryonic stem cell
18	chr14:33041600-33042600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
19	chr14:33041600-33042800	Enhancers	Fetal Heart	heart
20	chr14:33041600-33043200	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:33041800-33042400	Enhancers	HUES6 Cell Line	embryonic stem cell
22	chr14:33041800-33042400	Flanking Active TSS	Fetal Intestine Small	intestine
23	chr14:33042000-33042400	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
24	chr14:33042000-33042400	Enhancers	Brain Inferior Temporal Lobe	brain
25	chr14:33042000-33042400	Enhancers	Fetal Kidney	kidney
26	chr14:33042000-33042400	Enhancers	Left Ventricle	heart
27	chr14:33042000-33042400	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr14:33042000-33042400	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr14:33042000-33042600	Flanking Active TSS	Liver	Liver
30	chr14:33042200-33042400	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
31	chr14:33042200-33042400	Enhancers	iPS-20b Cell Line	embryonic stem cell
32	chr14:33042200-33042400	Enhancers	Duodenum Mucosa	Duodenum
33	chr14:33042200-33042400	Active TSS	Fetal Intestine Large	intestine
34	chr14:33042200-33042400	Enhancers	Right Ventricle	heart
35	chr14:33042200-33042400	Enhancers	Sigmoid Colon	Sigmoid Colon
36	chr14:33042200-33042400	Enhancers	GM12878-XiMat	blood
37	chr14:33042200-33042600	Enhancers	Brain Cingulate Gyrus	brain
38	chr14:33042200-33045000	Weak transcription	Brain Substantia Nigra	brain
39	chr14:33042200-33045600	Weak transcription	Duodenum Smooth Muscle	Duodenum
40	chr14:33042200-33045600	Weak transcription	Rectal Smooth Muscle	rectum

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